RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 GPR82Q96P67 336 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 CHD3Q12873 2000 aaKnown RBP12.11□□□□□ -0.47
COL4A3-202ENST00000396578 ARF6P62330 175 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 MBNL2Q5VZF2 373 aaKnown RBP12.11□□□□□ -0.47
COL4A3-202ENST00000396578 SPSB4Q96A44 273 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 UCN2Q96RP3 112 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 VCX2Q9H322 139 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 A1L4Q6 167 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 HIST1H1AQ02539 215 aaPredicted RBP12.11□□□□□ -0.47
COL4A3-202ENST00000396578 FXYD3Q14802 87 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 DNAJC4Q9NNZ3 241 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 MRPS18AQ9NVS2 196 aaKnown RBP12.11□□□□□ -0.47
COL4A3-202ENST00000396578 DOCK3Q8IZD9 2030 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 C21orf140B9A014 251 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 CD1AP06126 327 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 SNRPCP09234 159 aaKnown RBP12.11□□□□□ -0.47
COL4A3-202ENST00000396578 LIFP15018 202 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 ZNF430Q9H8G1 570 aaPredicted RBP12.11□□□□□ -0.47
COL4A3-202ENST00000396578 METTL1Q9UBP6 276 aaKnown RBP12.11□□□□□ -0.47
COL4A3-202ENST00000396578 A0A1W2PPE3 182 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 TRGC1P0CF51 173 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 NUDT10Q8NFP7 164 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 NUDT11Q96G61 164 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 AQP10Q96PS8 301 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 PRDM14Q9GZV8 571 aa12.11□□□□□ -0.47
COL4A3-202ENST00000396578 MOSPD3O75425 235 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 CELA2BP08218 269 aaPredicted RBP12.1□□□□□ -0.47
COL4A3-202ENST00000396578 KLK15Q9H2R5 256 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 IGKV3D-11A0A0A0MRZ8 115 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 C9orf172C9J069 976 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 IGKV3-11P04433 115 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 TMEM252Q8N6L7 170 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 LINC00518Q8N0U6 118 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 PRR7Q8TB68 274 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 TIMP4Q99727 224 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 TRIP6Q15654 476 aaKnown RBP12.1□□□□□ -0.47
COL4A3-202ENST00000396578 SRSF12Q8WXF0 261 aaKnown RBP12.1□□□□□ -0.47
COL4A3-202ENST00000396578 PRELID3AQ96N28 172 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 CISD3P0C7P0 127 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 FSTP19883 344 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 FCGR2BP31994 310 aaPredicted RBP12.1□□□□□ -0.47
COL4A3-202ENST00000396578 DEFB124Q8NES8 71 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 APOBEC4Q8WW27 367 aaKnown RBP12.1□□□□□ -0.47
COL4A3-202ENST00000396578 PPIAL4EA0A075B759 164 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 PPIAL4DF5H284 164 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 SIGLEC5O15389 551 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 C1QL1O75973 258 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 NTN1O95631 604 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 PPIAL4FP0DN26 164 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 PLAURQ03405 335 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 SIGLEC14Q08ET2 396 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 PAPPA-AS1Q5QFB9 102 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 PPIAL4AQ9Y536 164 aa12.1□□□□□ -0.47
COL4A3-202ENST00000396578 SIPA1L3O60292 1781 aaPredicted RBP12.1□□□□□ -0.47
COL4A3-202ENST00000396578 A0A1W2PQM1 296 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 GDF9O60383 454 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 C8orf82Q6P1X6 216 aaPredicted RBP12.09□□□□□ -0.47
COL4A3-202ENST00000396578 IGHV1OR15-9A0A0B4J2B8 117 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 A0A1W2PPC1 479 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 H0YL77 283 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 EPHA8P29322 1005 aaPredicted RBP12.09□□□□□ -0.47
COL4A3-202ENST00000396578 TFPI2P48307 235 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 RELQ04864 619 aaPredicted RBP12.09□□□□□ -0.47
COL4A3-202ENST00000396578 BIVMQ86UB2 503 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 DPRXA6NFQ7 191 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 NANOS3P60323 173 aaKnown RBP12.09□□□□□ -0.47
COL4A3-202ENST00000396578 MEF2CQ06413 473 aaPredicted RBP12.09□□□□□ -0.47
COL4A3-202ENST00000396578 MAFAQ8NHW3 353 aaPredicted RBP12.09□□□□□ -0.47
COL4A3-202ENST00000396578 MARS2Q96GW9 593 aaKnown RBP12.09□□□□□ -0.47
COL4A3-202ENST00000396578 HILPDAQ9Y5L2 63 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 C19orf24Q9BVV8 132 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 HRKO00198 91 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 CFDP00746 253 aaPredicted RBP12.09□□□□□ -0.47
COL4A3-202ENST00000396578 PLAUP00749 431 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 GAB4Q2WGN9 574 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 ZNF600Q6ZNG1 722 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 ZNF414Q96IQ9 312 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 PLA2G2FQ9BZM2 168 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 PPP1R3EQ9H7J1 279 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 TMEM160Q9NX00 188 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 FAM90A26D6RGX4 464 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 TNFSF14O43557 240 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 RPS11P62280 158 aaKnown RBP eCLIP12.09□□□□□ -0.47
COL4A3-202ENST00000396578 CTAG1AP78358 180 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 SPEM2Q0P670 501 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 ZNF56Q15929 161 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 MIC13Q5XKP0 118 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 GCSAMQ8N6F7 178 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 C2orf88Q9BSF0 95 aa12.09□□□□□ -0.47
COL4A3-202ENST00000396578 GBF1Q92538 1859 aa12.08□□□□□ -0.47
COL4A3-202ENST00000396578 C16orf97H3BN30 126 aa12.08□□□□□ -0.48
COL4A3-202ENST00000396578 CCL3P10147 92 aa12.08□□□□□ -0.48
COL4A3-202ENST00000396578 HCP5Q6MZN7 132 aa12.08□□□□□ -0.48
COL4A3-202ENST00000396578 NEUROG1Q92886 237 aa12.08□□□□□ -0.48
COL4A3-202ENST00000396578 SCTP09683 121 aa12.08□□□□□ -0.48
COL4A3-202ENST00000396578 C1orf210Q8IVY1 113 aa12.08□□□□□ -0.48
COL4A3-202ENST00000396578 OR13C6PQ8NH95 151 aa12.08□□□□□ -0.48
COL4A3-202ENST00000396578 ALKBH7Q9BT30 221 aaPredicted RBP12.08□□□□□ -0.48
COL4A3-202ENST00000396578 ZDHHC8Q9ULC8 765 aa12.08□□□□□ -0.48
COL4A3-202ENST00000396578 IGHV3OR16-12A0A075B7B8 117 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms