RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 LRRC75BQ2VPJ9 315 aa14.94□□□□□ -0.02
SQSTM1-202ENST00000389805 ZCCHC14Q8WYQ9 949 aaKnown RBP14.94□□□□□ -0.02
SQSTM1-202ENST00000389805 ZNF488Q96MN9 340 aa14.94□□□□□ -0.02
SQSTM1-202ENST00000389805 PATZ1Q9HBE1 687 aaKnown RBP14.94□□□□□ -0.02
SQSTM1-202ENST00000389805 KIAA1324LA8MWY0 1029 aaPredicted RBP14.94□□□□□ -0.02
SQSTM1-202ENST00000389805 SYNGR2O43760 224 aa14.94□□□□□ -0.02
SQSTM1-202ENST00000389805 GGCTO75223 188 aaKnown RBP14.94□□□□□ -0.02
SQSTM1-202ENST00000389805 MEOX1P50221 254 aa14.94□□□□□ -0.02
SQSTM1-202ENST00000389805 MRPL21Q7Z2W9 205 aaKnown RBP14.94□□□□□ -0.02
SQSTM1-202ENST00000389805 APH1AQ96BI3 265 aa14.94□□□□□ -0.02
SQSTM1-202ENST00000389805 RAB40CQ96S21 281 aa14.94□□□□□ -0.02
SQSTM1-202ENST00000389805 AGMATQ9BSE5 352 aa14.94□□□□□ -0.02
SQSTM1-202ENST00000389805 MSL2Q9HCI7 577 aa14.94□□□□□ -0.02
SQSTM1-202ENST00000389805 IL36GQ9NZH8 169 aa14.94□□□□□ -0.02
SQSTM1-202ENST00000389805 MTCH1Q9NZJ7 389 aa14.94□□□□□ -0.02
SQSTM1-202ENST00000389805 M0QZK8 103 aa14.93□□□□□ -0.02
SQSTM1-202ENST00000389805 PAGE4O60829 102 aa14.93□□□□□ -0.02
SQSTM1-202ENST00000389805 CRYAAP02489 173 aa14.93□□□□□ -0.02
SQSTM1-202ENST00000389805 OR5D13Q8NGL4 314 aa14.93□□□□□ -0.02
SQSTM1-202ENST00000389805 VN1R17PQ8TDU5 208 aa14.93□□□□□ -0.02
SQSTM1-202ENST00000389805 OR2J1Q9GZK6 312 aa14.93□□□□□ -0.02
SQSTM1-202ENST00000389805 WDR61Q9GZS3 305 aaKnown RBP14.93□□□□□ -0.02
SQSTM1-202ENST00000389805 F2RP25116 425 aa14.93□□□□□ -0.02
SQSTM1-202ENST00000389805 CDKN1AP38936 164 aa14.93□□□□□ -0.02
SQSTM1-202ENST00000389805 ACSM6Q6P461 480 aa14.93□□□□□ -0.02
SQSTM1-202ENST00000389805 LINC00470Q9BZP3 86 aa14.93□□□□□ -0.02
SQSTM1-202ENST00000389805 CD300LBA8K4G0 201 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 SYNGR1O43759 233 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 GAGE1Q13065 139 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 HES3Q5TGS1 186 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 UBALD1Q8TB05 177 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 TAF15Q92804 592 aaKnown RBP eCLIP14.92□□□□□ -0.024e-7■□□□□ 10.7
SQSTM1-202ENST00000389805 PSMG3Q9BT73 122 aaPredicted RBP14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 ABI3Q9P2A4 366 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 RNF150Q9ULK6 438 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 GVINP1Q7Z2Y8 2422 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 C21orf140B9A014 251 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 H0Y980 276 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 SP1P08047 785 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 HNF1AP20823 631 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 SERF2P84101 59 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 RNFT1Q5M7Z0 435 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 KCNIP4Q6PIL6 250 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 Q6ZWC4 215 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 TMPRSS7Q7RTY8 843 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 CENPVQ7Z7K6 275 aaPredicted RBP14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 IL1F10Q8WWZ1 152 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 IMMP2LQ96T52 175 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 PRR14LQ5THK1 2151 aa14.92□□□□□ -0.02
SQSTM1-202ENST00000389805 LINC00614P0C842 121 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 SPATA46Q5T0L3 261 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 CMTM2Q8TAZ6 248 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 ANAPC16Q96DE5 110 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 MIEN1Q9BRT3 115 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 TRAV39A0A0B4J263 110 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 PLA2G2CQ5R387 149 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 C11orf42Q8N5U0 333 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 ERRFI1Q9UJM3 462 aaPredicted RBP14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 RP1L1Q8IWN7 2480 aaPredicted RBP14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 DMXL1Q9Y485 3027 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 NPPCP23582 126 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 ADMP35318 185 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 UBE2G2P60604 165 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 HBG1P69891 147 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 HBG2P69892 147 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 POM121L2Q96KW2 1035 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 DNAJC4Q9NNZ3 241 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 TMEM106BQ9NUM4 274 aa14.91□□□□□ -0.02
SQSTM1-202ENST00000389805 DUXBA0A1W2PPF3 345 aa14.9□□□□□ -0.02
SQSTM1-202ENST00000389805 IGKV1-39P01597 117 aa14.9□□□□□ -0.02
SQSTM1-202ENST00000389805 IGKV1D-39P04432 117 aa14.9□□□□□ -0.02
SQSTM1-202ENST00000389805 CD82P27701 267 aa14.9□□□□□ -0.02
SQSTM1-202ENST00000389805 RPL15P61313 204 aaKnown RBP14.9□□□□□ -0.02
SQSTM1-202ENST00000389805 NRN1LQ496H8 165 aa14.9□□□□□ -0.02
SQSTM1-202ENST00000389805 MCEMP1Q8IX19 187 aa14.9□□□□□ -0.02
SQSTM1-202ENST00000389805 DERL1Q9BUN8 251 aa14.9□□□□□ -0.02
SQSTM1-202ENST00000389805 PPP1R3CQ9UQK1 317 aa14.9□□□□□ -0.02
SQSTM1-202ENST00000389805 NBEAQ8NFP9 2946 aa14.9□□□□□ -0.02
SQSTM1-202ENST00000389805 IGHV3-64DA0A0J9YX35 117 aa14.9□□□□□ -0.02
SQSTM1-202ENST00000389805 C1QTNF9P0C862 333 aa14.9□□□□□ -0.02
SQSTM1-202ENST00000389805 SLC38A11Q08AI6 406 aa14.9□□□□□ -0.02
SQSTM1-202ENST00000389805 APOBEC3DQ96AK3 386 aaPredicted RBP14.9□□□□□ -0.02
SQSTM1-202ENST00000389805 HSPB9Q9BQS6 159 aa14.9□□□□□ -0.02
SQSTM1-202ENST00000389805 TMEM250H0YL14 139 aa14.89□□□□□ -0.03
SQSTM1-202ENST00000389805 SRP14P37108 136 aaKnown RBP14.89□□□□□ -0.03
SQSTM1-202ENST00000389805 CEACAM21Q3KPI0 293 aa14.89□□□□□ -0.03
SQSTM1-202ENST00000389805 C20orf204Q6ZNR8 217 aa14.89□□□□□ -0.03
SQSTM1-202ENST00000389805 PINX1Q96BK5 328 aaKnown RBP14.89□□□□□ -0.03
SQSTM1-202ENST00000389805 CNOT1A5YKK6 2376 aaKnown RBP14.89□□□□□ -0.03
SQSTM1-202ENST00000389805 WISP2O76076 250 aa14.89□□□□□ -0.03
SQSTM1-202ENST00000389805 TYMSP04818 313 aa14.89□□□□□ -0.03
SQSTM1-202ENST00000389805 PPP1CBP62140 327 aa14.89□□□□□ -0.03
SQSTM1-202ENST00000389805 OR10G9Q8NGN4 311 aa14.89□□□□□ -0.03
SQSTM1-202ENST00000389805 OR10G7Q8NGN6 311 aa14.89□□□□□ -0.03
SQSTM1-202ENST00000389805 MED12LQ86YW9 2145 aa14.89□□□□□ -0.03
SQSTM1-202ENST00000389805 HS3ST1O14792 307 aa14.88□□□□□ -0.03
SQSTM1-202ENST00000389805 TNFSF13O75888 250 aa14.88□□□□□ -0.03
SQSTM1-202ENST00000389805 PXMP4Q9Y6I8 212 aa14.88□□□□□ -0.03
SQSTM1-202ENST00000389805 CLDN1O95832 211 aa14.88□□□□□ -0.03
SQSTM1-202ENST00000389805 IL6RP08887 468 aaPredicted RBP14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms