RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 CCL13Q99616 98 aa9.84□□□□□ -0.83
PTPRF-203ENST00000372407 HIGD1AQ9Y241 93 aa9.84□□□□□ -0.83
PTPRF-203ENST00000372407 CXorf65A6NEN9 183 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 UCP3P55916 312 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 RND3P61587 244 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 SNAI3Q3KNW1 292 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 SAXO1Q8IYX7 474 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 WDR31Q8NA23 367 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 FAM216AQ8WUB2 273 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 DIRC2Q96SL1 478 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 ODAMA1E959 279 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 AHRRA9YTQ3 701 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 IGKV3-11P04433 115 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 RPLP1P05386 114 aaKnown RBP9.83□□□□□ -0.84
PTPRF-203ENST00000372407 ZNF735P0CB33 412 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 COX5BP10606 129 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 COTL1Q14019 142 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 ZNF441Q8N8Z8 693 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 ZNF714Q96N38 554 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 HSPB9Q9BQS6 159 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 MRPL37Q9BZE1 423 aaKnown RBP9.83□□□□□ -0.84
PTPRF-203ENST00000372407 IGKV3-7A0A075B6H7 116 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 CRYBA2P53672 197 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 SLC35B1P78383 322 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 EGR4Q05215 589 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 SRSF9Q13242 221 aaKnown RBP eCLIP9.83□□□□□ -0.84
PTPRF-203ENST00000372407 ZNF826PQ6ZT77 177 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 GBGT1Q8N5D6 347 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 ZNF645Q8N7E2 425 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 OR8A1Q8NGG7 326 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 SOSTQ9BQB4 213 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 PCGF1Q9BSM1 259 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 PRDM14Q9GZV8 571 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 IL17BQ9UHF5 180 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 HLA-DQA1P01909 254 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 HOXD4P09016 255 aaPredicted RBP9.83□□□□□ -0.84
PTPRF-203ENST00000372407 COL5A1-AS1Q5SY13 56 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 C19orf48Q6RUI8 117 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 RBKSQ9H477 322 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 CDC42EP3Q9UKI2 254 aa9.83□□□□□ -0.84
PTPRF-203ENST00000372407 TTC28Q96AY4 2481 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 ARID2Q68CP9 1835 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 SCN2AQ99250 2005 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 RHBDL1O75783 438 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 CD8AP01732 235 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 CTSBP07858 339 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 DANCRP0C864 163 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 PSMB2P49721 201 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 HSPE1P61604 102 aaKnown RBP9.82□□□□□ -0.84
PTPRF-203ENST00000372407 RPL8P62917 257 aaKnown RBP9.82□□□□□ -0.84
PTPRF-203ENST00000372407 MMD2Q8IY49 270 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 MYOZ3Q8TDC0 251 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 TMEM140Q9NV12 185 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.82□□□□□ -0.84
PTPRF-203ENST00000372407 IBA57Q5T440 356 aaKnown RBP9.82□□□□□ -0.84
PTPRF-203ENST00000372407 CALHM1Q8IU99 346 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 SELENOHQ8IZQ5 122 aaKnown RBP9.82□□□□□ -0.84
PTPRF-203ENST00000372407 ITLN1Q8WWA0 313 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 RBM14Q96PK6 669 aaKnown RBP9.82□□□□□ -0.84
PTPRF-203ENST00000372407 IGHV3-21A0A0B4J1V1 117 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 LOC390937A0A1W2PQ73 354 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 NAT2P11245 290 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 HOXA4Q00056 320 aaPredicted RBP9.82□□□□□ -0.84
PTPRF-203ENST00000372407 TNFRSF9Q07011 255 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 MIC13Q5XKP0 118 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 OR8G5Q8NG78 346 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 OR52M1Q8NGK5 317 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 WNT2BQ93097 391 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 GPHA2Q96T91 129 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 HEATR5BQ9P2D3 2071 aa9.82□□□□□ -0.84
PTPRF-203ENST00000372407 GCGP01275 180 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 SNRPCP09234 159 aaKnown RBP9.81□□□□□ -0.84
PTPRF-203ENST00000372407 DLX1P56177 255 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 NOTCH3Q9UM47 2321 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 C5orf52A6NGY3 159 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 KLF7O75840 302 aaPredicted RBP9.81□□□□□ -0.84
PTPRF-203ENST00000372407 ZNF708P17019 499 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 NUBP1P53384 320 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 ERVFRD-1P60508 538 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 KCNMB1Q16558 191 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 SPANXN1Q5VSR9 72 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 POC1AQ8NBT0 407 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 DNASE2BQ8WZ79 361 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 SPSB2Q99619 263 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 J3KRW8 73 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 THY1P04216 161 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 ZNF658BQ4V348 819 aaPredicted RBP9.81□□□□□ -0.84
PTPRF-203ENST00000372407 PRNTQ86SH4 94 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 ARHGEF17Q96PE2 2063 aaPredicted RBP9.81□□□□□ -0.84
PTPRF-203ENST00000372407 STAG3L2P0CL84 134 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 OR1P1Q8NH06 330 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 LSM10Q969L4 123 aaKnown RBP9.81□□□□□ -0.84
PTPRF-203ENST00000372407 COL25A1Q9BXS0 654 aaPredicted RBP9.81□□□□□ -0.84
PTPRF-203ENST00000372407 GPR61Q9BZJ8 451 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 CHRNA10Q9GZZ6 450 aa9.81□□□□□ -0.84
PTPRF-203ENST00000372407 MARCH11A6NNE9 402 aa9.8□□□□□ -0.84
PTPRF-203ENST00000372407 IGHMP01871 453 aa9.8□□□□□ -0.84
PTPRF-203ENST00000372407 C10orf128Q5T292 105 aa9.8□□□□□ -0.84
PTPRF-203ENST00000372407 RBPMS2Q6ZRY4 209 aaKnown RBP9.8□□□□□ -0.84
PTPRF-203ENST00000372407 TMEM105Q8N8V8 129 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms