RNA–Protein interactions for RNA: ENST00000369746.2

UBE3D-202, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 2,740 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-202ENST00000369746 PITX1P78337 314 aaPredicted RBP4.28□□□□□ -1.72
UBE3D-202ENST00000369746 HLA-DRB3P79483 266 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 HIST1H1AQ02539 215 aaPredicted RBP4.28□□□□□ -1.72
UBE3D-202ENST00000369746 P2RY6Q15077 328 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 HIST3H3Q16695 136 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 FAM174BQ3ZCQ3 159 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 SPATA31B1PQ5VZV4 182 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 NCBP2-AS2Q69YL0 99 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 MFSD12Q6NUT3 480 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 PAQR6Q6TCH4 344 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 UNQ6126/PRO20091Q6UXV3 157 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 FOXI2Q6ZQN5 318 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 SLC25A42Q86VD7 318 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 C17orf64Q86WR6 236 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 ABHD12Q8N2K0 398 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 DEFB125Q8N687 156 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 DEFB119Q8N690 84 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 ZNF611Q8N823 705 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 TMEM229BQ8NBD8 167 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 OR4C13Q8NGP0 309 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 OR2T27Q8NH04 317 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 SLC25A38Q96DW6 304 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 FAM173AQ9BQD7 235 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 CXCL16Q9H2A7 254 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 ZDHHC11Q9H8X9 412 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 PCTPQ9UKL6 214 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 SLC7A7Q9UM01 511 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 ZNF835Q9Y2P0 537 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 VCANP13611 3396 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 CABIN1Q9Y6J0 2220 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 PTPN13Q12923 2485 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 A0A1W2PPI3 338 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 J3QRE1 110 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 SIRPB1O00241 398 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 GEMIN2O14893 280 aaKnown RBP4.27□□□□□ -1.73
UBE3D-202ENST00000369746 MPDU1O75352 247 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 PPP1R3DO95685 299 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 TNFP01375 233 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 C8orf88P0DMB2 117 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 XGP55808 180 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 RHOBP62745 196 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 PLP2Q04941 152 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 MS4A18Q3C1V0 323 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 ZNF506Q5JVG8 444 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 ENTPD8Q5MY95 495 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 DPPA3Q6W0C5 159 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 DTX2Q86UW9 622 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 APRG1Q8IVJ8 170 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 CMTM4Q8IZR5 234 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 C5orf17Q8NAS9 161 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 ZNF418Q8TF45 676 aaPredicted RBP4.27□□□□□ -1.73
UBE3D-202ENST00000369746 AQP3Q92482 292 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 DCUN1D4Q92564 292 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 EIF5A2Q9GZV4 153 aaKnown RBP4.27□□□□□ -1.73
UBE3D-202ENST00000369746 SLC25A51Q9H1U9 297 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 ZNF703Q9H7S9 590 aaPredicted RBP4.27□□□□□ -1.73
UBE3D-202ENST00000369746 RLIMQ9NVW2 624 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 RCL1Q9Y2P8 373 aaKnown RBP4.27□□□□□ -1.73
UBE3D-202ENST00000369746 ANKRD12Q6UB98 2062 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 ANKRD11Q6UB99 2663 aaPredicted RBP4.27□□□□□ -1.73
UBE3D-202ENST00000369746 DEGS1O15121 323 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 WT1P19544 449 aaPredicted RBP4.27□□□□□ -1.73
UBE3D-202ENST00000369746 TSPOP30536 169 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 DUTP33316 252 aaKnown RBP4.27□□□□□ -1.73
UBE3D-202ENST00000369746 CA7P43166 264 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 SNRPNP63162 240 aaKnown RBP4.27□□□□□ -1.73
UBE3D-202ENST00000369746 SLC35B1P78383 322 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 ZNF92Q03936 586 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 HSD52Q0P140 79 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 PRSS45Q7RTY3 260 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 PPP1R32Q7Z5V6 425 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 SCCPDHQ8NBX0 429 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 GPR32P1Q8NGA4 272 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 OR4C16Q8NGL9 310 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 RBMXL1Q96E39 390 aaKnown RBP4.27□□□□□ -1.73
UBE3D-202ENST00000369746 BMFQ96LC9 184 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 NDFIP1Q9BT67 221 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 RNF126Q9BV68 326 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 SNRNP25Q9BV90 132 aaKnown RBP4.27□□□□□ -1.73
UBE3D-202ENST00000369746 OR51I2Q9H344 312 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 FLRT3Q9NZU0 649 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 ERG28Q9UKR5 140 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 SIGLEC9Q9Y336 463 aa4.27□□□□□ -1.73
UBE3D-202ENST00000369746 TRBV9A0A0B4J1U6 114 aa4.26□□□□□ -1.73
UBE3D-202ENST00000369746 A0A0B4J2E0 115 aa4.26□□□□□ -1.73
UBE3D-202ENST00000369746 A0A1B0GX12 115 aa4.26□□□□□ -1.73
UBE3D-202ENST00000369746 OR4C46A6NHA9 309 aa4.26□□□□□ -1.73
UBE3D-202ENST00000369746 SAP18O00422 153 aaKnown RBP4.26□□□□□ -1.73
UBE3D-202ENST00000369746 AGPAT2O15120 278 aa4.26□□□□□ -1.73
UBE3D-202ENST00000369746 HYPMO75409 117 aa4.26□□□□□ -1.73
UBE3D-202ENST00000369746 CLDN14O95500 239 aa4.26□□□□□ -1.73
UBE3D-202ENST00000369746 HAND1O96004 215 aa4.26□□□□□ -1.73
UBE3D-202ENST00000369746 PFN1P07737 140 aaKnown RBP4.26□□□□□ -1.73
UBE3D-202ENST00000369746 SRP19P09132 144 aaKnown RBP4.26□□□□□ -1.73
UBE3D-202ENST00000369746 PTHLHP12272 177 aa4.26□□□□□ -1.73
UBE3D-202ENST00000369746 HIST1H1CP16403 213 aaKnown RBP4.26□□□□□ -1.73
UBE3D-202ENST00000369746 MDH2P40926 338 aaKnown RBP4.26□□□□□ -1.73
UBE3D-202ENST00000369746 P2RY1P47900 373 aa4.26□□□□□ -1.73
UBE3D-202ENST00000369746 AMTP48728 403 aa4.26□□□□□ -1.73
UBE3D-202ENST00000369746 GPM6AP51674 278 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms