RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 ZNF431Q8TF32 576 aaPredicted RBP7.51□□□□□ -1.21
USP4-202ENST00000351842 OR2A7Q96R45 310 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 SAV1Q9H4B6 383 aaPredicted RBP7.51□□□□□ -1.21
USP4-202ENST00000351842 METTL8Q9H825 291 aaKnown RBP7.51□□□□□ -1.21
USP4-202ENST00000351842 TRBV6-7A0A0A0MS04 114 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 TRBV23-1A0A0A0MS06 115 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 FCGR3BO75015 233 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 ZNF735P0CB33 412 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 GNRHRP30968 328 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 SSTP61278 116 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 RBMS2Q15434 407 aaKnown RBP7.51□□□□□ -1.21
USP4-202ENST00000351842 C11orf42Q8N5U0 333 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 RTN4IP1Q8WWV3 396 aaPredicted RBP7.51□□□□□ -1.21
USP4-202ENST00000351842 MRGPRFQ96AM1 343 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.51□□□□□ -1.21
USP4-202ENST00000351842 SLC2A9Q9NRM0 540 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 MED9Q9NWA0 146 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 MGAT4AQ9UM21 535 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 SNRPGP15A8MWD9 76 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 SIX6O95475 246 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 HOXB5P09067 269 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 SAA4P35542 130 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 RPL35P42766 123 aaKnown RBP7.5□□□□□ -1.21
USP4-202ENST00000351842 MEF2CQ06413 473 aaPredicted RBP7.5□□□□□ -1.21
USP4-202ENST00000351842 TMEM219Q86XT9 240 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 DRAM1Q8N682 238 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 CLCC1Q96S66 551 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 TBX15Q96SF7 602 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 CLEC7AQ9BXN2 247 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 ZNF436Q9C0F3 470 aaPredicted RBP7.5□□□□□ -1.21
USP4-202ENST00000351842 C5orf66Q9H5L9 145 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 C13orf42A0A1B0GVH6 325 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 NUPL2O15504 423 aaKnown RBP7.5□□□□□ -1.21
USP4-202ENST00000351842 KRASP01116 189 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 PPP1R1AQ13522 171 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 LRRC37A5PQ49AS3 106 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 LDLRAD2Q5SZI1 272 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 CMTM1Q8IZ96 169 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 HINT2Q9BX68 163 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 FXYD6Q9H0Q3 95 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 PIPOXQ9P0Z9 390 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 NSG2Q9Y328 171 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 RAMP3O60896 148 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 BTN1A1Q13410 526 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 SPINK9Q5DT21 86 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 TBC1D26Q86UD7 250 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 H1FOOQ8IZA3 346 aaPredicted RBP7.5□□□□□ -1.21
USP4-202ENST00000351842 ASB13Q8WXK3 278 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 POM121Q96HA1 1249 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 MRPL20Q9BYC9 149 aaKnown RBP7.5□□□□□ -1.21
USP4-202ENST00000351842 MS4A7Q9GZW8 240 aaPredicted RBP7.5□□□□□ -1.21
USP4-202ENST00000351842 SDHAF2Q9NX18 166 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 SESN1Q9Y6P5 492 aa7.5□□□□□ -1.21
USP4-202ENST00000351842 F8W036 122 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 J3QR06 171 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 RGS11O94810 467 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 MPC2O95563 127 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 OR5AC1P0C628 307 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 RPL30P62888 115 aaKnown RBP7.49□□□□□ -1.21
USP4-202ENST00000351842 SSBP1Q04837 148 aaKnown RBP7.49□□□□□ -1.21
USP4-202ENST00000351842 PIP4P2Q8N4L2 257 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 EDARADDQ8WWZ3 215 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 GSKIPQ9P0R6 139 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 INSIG2Q9Y5U4 225 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 STAB1Q9NY15 2570 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 F5H0A9 414 aaPredicted RBP7.49□□□□□ -1.21
USP4-202ENST00000351842 NDUFB6O95139 128 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 GIPP09681 153 aaPredicted RBP7.49□□□□□ -1.21
USP4-202ENST00000351842 AKR1C2P52895 323 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 RELQ04864 619 aaPredicted RBP7.49□□□□□ -1.21
USP4-202ENST00000351842 NCR3LG1Q68D85 454 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 CYB5R2Q6BCY4 276 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 TGIF2LXQ8IUE1 241 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 ARRDC1Q8N5I2 433 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 OR13D1Q8NGV5 346 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 OR9G1Q8NH87 305 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 FOXC2Q99958 501 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 IFI27L2Q9H2X8 130 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 JPT1Q9UK76 154 aa7.49□□□□□ -1.21
USP4-202ENST00000351842 A0A0U1RQK1 487 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 CENPVL3A0A0U1RRI6 287 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 NCBP2LA6PVI3 153 aaKnown RBP7.48□□□□□ -1.21
USP4-202ENST00000351842 LINC00473A8K010 186 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 CD74P04233 296 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 CTXN2P0C2S0 81 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 VSIG10L2P0DP72 767 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 HTR1DP28221 377 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 ACTBL2Q562R1 376 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 C9orf152Q5JTZ5 239 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 VAX1Q5SQQ9 334 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 ZNF626Q68DY1 528 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 ZNF880Q6PDB4 577 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 SPAG16Q8N0X2 631 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 DYNAPQ8N1N2 210 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 C5orf30Q96GV9 206 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 SEC22AQ96IW7 307 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 NPIPB11E5RHQ5 1161 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 ADAP1O75689 374 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 SCGB1D2O95969 90 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 IGKV1-16P04430 117 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms