RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 A0A0G2JRQ6 117 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 DUXBA0A1W2PPF3 345 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 GAGE12BA1L429 117 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 G3V3Y1 287 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 SLC33A1O00400 549 aaPredicted RBP4.72□□□□□ -1.65
CSDE1-202ENST00000339438 GOSR1O95249 250 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 HLA-HP01893 362 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 MDH2P40926 338 aaKnown RBP4.72□□□□□ -1.65
CSDE1-202ENST00000339438 ZNF83P51522 516 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 HNRNPA3P51991 378 aaKnown RBP4.72□□□□□ -1.65
CSDE1-202ENST00000339438 GFRA1P56159 465 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 SRPXP78539 464 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 TLE3Q04726 772 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 RBPJQ06330 500 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 ARFRP1Q13795 201 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 GNMTQ14749 295 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 FAM71F2Q6NXP2 309 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 VWA1Q6PCB0 445 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 PLXDC1Q8IUK5 500 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 ZNF440Q8IYI8 595 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 Q8NA96 180 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 MRPL30Q8TCC3 161 aaKnown RBP4.72□□□□□ -1.65
CSDE1-202ENST00000339438 PNRC2Q9NPJ4 139 aaKnown RBP4.72□□□□□ -1.65
CSDE1-202ENST00000339438 PTRH2Q9Y3E5 179 aaKnown RBP4.72□□□□□ -1.65
CSDE1-202ENST00000339438 A0A1W2PNV4 684 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 A0A1W2PS18 150 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 C22orf46C9J442 243 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 HLA-DQA2P01906 255 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 ZNF728P0DKX0 622 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 ZNF10P21506 573 aaPredicted RBP4.72□□□□□ -1.65
CSDE1-202ENST00000339438 BLVRBP30043 206 aaPredicted RBP4.72□□□□□ -1.65
CSDE1-202ENST00000339438 GNRHRP30968 328 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 ZNF133P52736 654 aaPredicted RBP4.72□□□□□ -1.65
CSDE1-202ENST00000339438 TLE1Q04724 770 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 PHLDA2Q53GA4 152 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 DMRTC1Q5HYR2 192 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 C16orf47Q6ZP98 133 aaPredicted RBP4.72□□□□□ -1.65
CSDE1-202ENST00000339438 BATF2Q8N1L9 274 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 DEFB125Q8N687 156 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 ZNF525Q8N782 197 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 OR1L3Q8NH93 324 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 OR51E1Q8TCB6 317 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 Q96M66 194 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 GP6Q9HCN6 339 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 NRN1Q9NPD7 142 aa4.72□□□□□ -1.65
CSDE1-202ENST00000339438 NXT1Q9UKK6 140 aaKnown RBP4.72□□□□□ -1.65
CSDE1-202ENST00000339438 J3QR06 171 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 CHST1O43916 411 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 C3orf79P0CE67 100 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 CCL4P13236 92 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 SRD5A2P31213 254 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 DUSP3P51452 185 aaPredicted RBP4.71□□□□□ -1.65
CSDE1-202ENST00000339438 PRRX1P54821 245 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 SGCBQ16585 318 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 LRRC75BQ2VPJ9 315 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 TMEM95Q3KNT9 176 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 OR4A47Q6IF82 309 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 Q6ZSR3 168 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 CA13Q8N1Q1 262 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 OR4P4Q8NGL7 312 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 OR5B3Q8NH48 314 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 ASB10Q8WXI3 467 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 MBD6Q96DN6 1003 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 LYZL4Q96KX0 146 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 KCNK17Q96T54 332 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 OCIAD1Q9NX40 245 aa4.71□□□□□ -1.65
CSDE1-202ENST00000339438 TBL2Q9Y4P3 447 aaKnown RBP4.71□□□□□ -1.65
CSDE1-202ENST00000339438 RBM7Q9Y580 266 aaKnown RBP4.71□□□□□ -1.65
CSDE1-202ENST00000339438 NBASA2RRP1 2371 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 A0A0U1RQK1 487 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 C3orf85A0A1B0GTC6 90 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 LOC102725191A0A1B0GVB3 256 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 CYSRT1A8MQ03 144 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 C11orf98E9PRG8 122 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 PLPP3O14495 311 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 CER1O95813 267 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 IGLC1P0CG04 106 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 CDC34P49427 236 aaPredicted RBP4.71□□□□□ -1.66
CSDE1-202ENST00000339438 KRTCAP3Q53RY4 240 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 TMEM41BQ5BJD5 291 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 FAM57BQ71RH2 274 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 NEGR1Q7Z3B1 354 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 OR51T1Q8NGJ9 327 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 STARD4Q96DR4 205 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 GNB4Q9HAV0 340 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 PRTFDC1Q9NRG1 225 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 BET1LQ9NYM9 111 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 SPTA1P02549 2419 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 TRAV8-6A0A0B4J262 113 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 TRAV34A0A0B4J273 112 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 PHF1O43189 567 aaPredicted RBP4.71□□□□□ -1.66
CSDE1-202ENST00000339438 SLC35E2P0CK97 266 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 IL11P20809 199 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 CBLN1P23435 193 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 SUMO1P63165 101 aaKnown RBP4.71□□□□□ -1.66
CSDE1-202ENST00000339438 PSG7Q13046 419 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 FOXE3Q13461 319 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 RAET1LQ5VY80 246 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 ZNF441Q8N8Z8 693 aa4.71□□□□□ -1.66
CSDE1-202ENST00000339438 OR8B12Q8NGG6 310 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms