RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 SLC25A38Q96DW6 304 aa12.53□□□□□ -0.4
CLN3-201ENST00000333496 CITED2Q99967 270 aaPredicted RBP12.53□□□□□ -0.4
CLN3-201ENST00000333496 TOLLIPQ9H0E2 274 aa12.53□□□□□ -0.4
CLN3-201ENST00000333496 LINC01548A6NM66 108 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 NCBP2LA6PVI3 153 aaKnown RBP12.52□□□□□ -0.4
CLN3-201ENST00000333496 ADARB2-AS1A8MUL3 147 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 RAB29O14966 203 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 FABP7O15540 132 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 PLXNB1O43157 2135 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 RAB25P57735 213 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 IFITM2Q01629 132 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 TATDN3Q17R31 274 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 C2orf68Q2NKX9 166 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 ZNF260Q3ZCT1 412 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 TCTEX1D4Q5JR98 221 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 ZNF57Q68EA5 555 aaPredicted RBP12.52□□□□□ -0.4
CLN3-201ENST00000333496 FAM71F2Q6NXP2 309 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 CENPVQ7Z7K6 275 aaPredicted RBP12.52□□□□□ -0.4
CLN3-201ENST00000333496 OR5AU1Q8NGC0 362 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 RITA1Q96K30 269 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 MARVELD1Q9BSK0 173 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 CABLES2Q9BTV7 478 aa12.52□□□□□ -0.4
CLN3-201ENST00000333496 A0A0B4J293 547 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 IGHG2P01859 326 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 CSF1P09603 554 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 CDK10Q15131 360 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 SRSF7Q16629 238 aaKnown RBP eCLIP12.51□□□□□ -0.41
CLN3-201ENST00000333496 FAM71E2Q8N5Q1 922 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 EDARADDQ8WWZ3 215 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 S1PR3Q99500 378 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 ABCG5Q9H222 651 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 LIN7CQ9NUP9 197 aaKnown RBP12.51□□□□□ -0.41
CLN3-201ENST00000333496 RDH8Q9NYR8 311 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 RNF150Q9ULK6 438 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 RBMX2Q9Y388 322 aaKnown RBP12.51□□□□□ -0.41
CLN3-201ENST00000333496 TRBV6-7A0A0A0MS04 114 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 TMEM235A6NFC5 223 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 CT45A6P0DMU7 189 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 CT45A5P0DMU8 189 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 CT45A7P0DMV0 189 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 PITPNAQ00169 270 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 CD83Q01151 205 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 KIR2DS1Q14954 304 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 ARL6IP1Q15041 203 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 Q6ZS49 121 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 NOXA1Q86UR1 476 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 FAM110DQ8TAY7 271 aaPredicted RBP12.51□□□□□ -0.41
CLN3-201ENST00000333496 TRIM63Q969Q1 353 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 NOL4LQ96MY1 436 aaPredicted RBP12.51□□□□□ -0.41
CLN3-201ENST00000333496 GHITMQ9H3K2 345 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 LINC00527Q9UJ94 153 aa12.51□□□□□ -0.41
CLN3-201ENST00000333496 BET1O15155 118 aa12.5□□□□□ -0.41
CLN3-201ENST00000333496 SCGNO76038 276 aa12.5□□□□□ -0.41
CLN3-201ENST00000333496 GSTP1P09211 210 aaKnown RBP12.5□□□□□ -0.41
CLN3-201ENST00000333496 DTYMKP23919 212 aa12.5□□□□□ -0.41
CLN3-201ENST00000333496 CNTFRP26992 372 aa12.5□□□□□ -0.41
CLN3-201ENST00000333496 NSUN5P1Q3KNT7 163 aa12.5□□□□□ -0.41
CLN3-201ENST00000333496 GLDNQ6ZMI3 551 aaPredicted RBP12.5□□□□□ -0.41
CLN3-201ENST00000333496 OR8H1Q8NGG4 311 aa12.5□□□□□ -0.41
CLN3-201ENST00000333496 NUDCD2Q8WVJ2 157 aa12.5□□□□□ -0.41
CLN3-201ENST00000333496 SLA2Q9H6Q3 261 aa12.5□□□□□ -0.41
CLN3-201ENST00000333496 ALG5Q9Y673 324 aa12.5□□□□□ -0.41
CLN3-201ENST00000333496 SSX5O60225 188 aa12.49□□□□□ -0.41
CLN3-201ENST00000333496 DIRAS3O95661 229 aa12.49□□□□□ -0.41
CLN3-201ENST00000333496 SLC6A1P30531 599 aa12.49□□□□□ -0.41
CLN3-201ENST00000333496 LINC00205P59089 165 aa12.49□□□□□ -0.41
CLN3-201ENST00000333496 ACTBP60709 375 aa12.49□□□□□ -0.41
CLN3-201ENST00000333496 SLC35E3Q7Z769 313 aa12.49□□□□□ -0.41
CLN3-201ENST00000333496 NDUFA11Q86Y39 141 aa12.49□□□□□ -0.41
CLN3-201ENST00000333496 S100A16Q96FQ6 103 aaKnown RBP12.49□□□□□ -0.41
CLN3-201ENST00000333496 C7orf50Q9BRJ6 194 aaKnown RBP12.49□□□□□ -0.41
CLN3-201ENST00000333496 THAP7Q9BT49 309 aaPredicted RBP12.49□□□□□ -0.41
CLN3-201ENST00000333496 RANGRFQ9HD47 186 aaPredicted RBP12.49□□□□□ -0.41
CLN3-201ENST00000333496 INMT-MINDY4F8WBC2 141 aa12.48□□□□□ -0.41
CLN3-201ENST00000333496 RRAS2P62070 204 aaPredicted RBP12.48□□□□□ -0.41
CLN3-201ENST00000333496 ZNF329Q86UD4 541 aa12.48□□□□□ -0.41
CLN3-201ENST00000333496 OR10J5Q8NHC4 309 aa12.48□□□□□ -0.41
CLN3-201ENST00000333496 HSPB9Q9BQS6 159 aa12.48□□□□□ -0.41
CLN3-201ENST00000333496 ST6GALNAC5Q9BVH7 336 aa12.48□□□□□ -0.41
CLN3-201ENST00000333496 COPZ2Q9P299 210 aa12.48□□□□□ -0.41
CLN3-201ENST00000333496 PSMB11A5LHX3 300 aa12.48□□□□□ -0.41
CLN3-201ENST00000333496 H0YJW9 148 aa12.48□□□□□ -0.41
CLN3-201ENST00000333496 GPR12P47775 334 aa12.48□□□□□ -0.41
CLN3-201ENST00000333496 MMDQ15546 238 aa12.48□□□□□ -0.41
CLN3-201ENST00000333496 PNLIPRP3Q17RR3 467 aa12.48□□□□□ -0.41
CLN3-201ENST00000333496 OR5AN1Q8NGI8 311 aa12.48□□□□□ -0.41
CLN3-201ENST00000333496 GRPEL2Q8TAA5 225 aa12.48□□□□□ -0.41
CLN3-201ENST00000333496 ABHD1Q96SE0 405 aa12.48□□□□□ -0.41
CLN3-201ENST00000333496 RASL11BQ9BPW5 248 aa12.48□□□□□ -0.41
CLN3-201ENST00000333496 TRAV18A0A075B6X5 111 aa12.47□□□□□ -0.41
CLN3-201ENST00000333496 OR5H14A6NHG9 310 aa12.47□□□□□ -0.41
CLN3-201ENST00000333496 CTDSPLO15194 276 aa12.47□□□□□ -0.41
CLN3-201ENST00000333496 C1QBP02746 253 aa12.47□□□□□ -0.41
CLN3-201ENST00000333496 OR8U9P0C7N5 309 aa12.47□□□□□ -0.41
CLN3-201ENST00000333496 GNG2P59768 71 aa12.47□□□□□ -0.41
CLN3-201ENST00000333496 TMEM69Q5SWH9 247 aa12.47□□□□□ -0.41
CLN3-201ENST00000333496 H1FOOQ8IZA3 346 aaPredicted RBP12.47□□□□□ -0.41
CLN3-201ENST00000333496 STPG2Q8N412 459 aa12.47□□□□□ -0.41
CLN3-201ENST00000333496 OR8U1Q8NH10 309 aa12.47□□□□□ -0.41
CLN3-201ENST00000333496 PHF21AQ96BD5 680 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms