RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 PMP22Q01453 160 aa11.3□□□□□ -0.6
SKA3-202ENST00000314759 PLP2Q04941 152 aa11.3□□□□□ -0.6
SKA3-202ENST00000314759 TFF3Q07654 80 aa11.3□□□□□ -0.6
SKA3-202ENST00000314759 TRA2AQ13595 282 aaKnown RBP eCLIP11.3□□□□□ -0.6
SKA3-202ENST00000314759 FFAR4Q5NUL3 377 aa11.3□□□□□ -0.6
SKA3-202ENST00000314759 MANBALQ9NQG1 85 aa11.3□□□□□ -0.6
SKA3-202ENST00000314759 DNAJC13O75165 2243 aa11.3□□□□□ -0.6
SKA3-202ENST00000314759 WDR86Q86TI4 376 aa11.3□□□□□ -0.6
SKA3-202ENST00000314759 CISD2Q8N5K1 135 aaKnown RBP11.3□□□□□ -0.6
SKA3-202ENST00000314759 MS4A10Q96PG2 267 aa11.3□□□□□ -0.6
SKA3-202ENST00000314759 TMEM147Q9BVK8 224 aa11.3□□□□□ -0.6
SKA3-202ENST00000314759 MBNL3Q9NUK0 354 aaKnown RBP11.3□□□□□ -0.6
SKA3-202ENST00000314759 TYMSP04818 313 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 BMP5P22003 454 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 RPL30P62888 115 aaKnown RBP11.29□□□□□ -0.6
SKA3-202ENST00000314759 APH1AQ96BI3 265 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 DIRC2Q96SL1 478 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 BOKQ9UMX3 212 aaPredicted RBP11.29□□□□□ -0.6
SKA3-202ENST00000314759 IGHEP01854 428 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 CFIP05156 583 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 P0C879 139 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 RPL15P61313 204 aaKnown RBP11.29□□□□□ -0.6
SKA3-202ENST00000314759 ZNF816Q0VGE8 651 aaPredicted RBP11.29□□□□□ -0.6
SKA3-202ENST00000314759 ATP6V1FQ16864 119 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 FAM53AQ6NSI3 398 aaPredicted RBP11.29□□□□□ -0.6
SKA3-202ENST00000314759 OR1L1Q8NH94 360 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 NPCDR1Q9BY65 106 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 ZNF703Q9H7S9 590 aaPredicted RBP11.29□□□□□ -0.6
SKA3-202ENST00000314759 TRAPPC1Q9Y5R8 145 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 CACNA1DQ01668 2161 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 IGHV3-64DA0A0J9YX35 117 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 A0A0U1RQK1 487 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 ODAMA1E959 279 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 ZNF320A2RRD8 509 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 LRRC30A6NM36 301 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 MT-CO3P00414 261 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 RPLP1P05386 114 aaKnown RBP11.29□□□□□ -0.6
SKA3-202ENST00000314759 SELEP16581 610 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 COX5AP20674 150 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 OR10J1P30954 320 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 SRP14P37108 136 aaKnown RBP11.29□□□□□ -0.6
SKA3-202ENST00000314759 TCF23Q7RTU1 214 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 OR10P1Q8NGE3 313 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 ZDHHC16Q969W1 377 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 NEIL1Q96FI4 390 aaPredicted RBP11.29□□□□□ -0.6
SKA3-202ENST00000314759 C5orf30Q96GV9 206 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 WIPI2Q9Y4P8 454 aa11.29□□□□□ -0.6
SKA3-202ENST00000314759 PCSK5Q92824 1860 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 RNF212BA8MTL3 300 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 ZG16O60844 167 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 SERPINA7P05543 415 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 ERVK11-1P61568 191 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 NUFIP2Q7Z417 695 aaKnown RBP11.28□□□□□ -0.6
SKA3-202ENST00000314759 SCCPDHQ8NBX0 429 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 OR2M7Q8NG81 312 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 HES7Q9BYE0 225 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 GTF3C1Q12789 2109 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 GRIFINA4D1Z8 144 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 VENTXO95231 258 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 SYNGR4O95473 234 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 BRWD1-AS2P59051 145 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 MSMO1Q15800 293 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 PMS2CLQ68D20 193 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 ZNF645Q8N7E2 425 aa11.28□□□□□ -0.6
SKA3-202ENST00000314759 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.28□□□□□ -0.6
SKA3-202ENST00000314759 PGPEP1LA6NFU8 196 aa11.27□□□□□ -0.6
SKA3-202ENST00000314759 C11orf94C9JXX5 98 aa11.27□□□□□ -0.6
SKA3-202ENST00000314759 NEURL1O76050 574 aa11.27□□□□□ -0.6
SKA3-202ENST00000314759 PDGFBP01127 241 aaPredicted RBP11.27□□□□□ -0.6
SKA3-202ENST00000314759 ZNF808Q8N4W9 903 aaPredicted RBP11.27□□□□□ -0.6
SKA3-202ENST00000314759 DTD1Q8TEA8 209 aa11.27□□□□□ -0.6
SKA3-202ENST00000314759 OR2D2Q9H210 308 aa11.27□□□□□ -0.6
SKA3-202ENST00000314759 FAM166BA8MTA8 275 aa11.27□□□□□ -0.61
SKA3-202ENST00000314759 S1PR2O95136 353 aa11.27□□□□□ -0.61
SKA3-202ENST00000314759 CRYAAP02489 173 aa11.27□□□□□ -0.61
SKA3-202ENST00000314759 BATFQ16520 125 aa11.27□□□□□ -0.61
SKA3-202ENST00000314759 ARSJQ5FYB0 599 aaPredicted RBP11.27□□□□□ -0.61
SKA3-202ENST00000314759 VASH2Q86V25 355 aa11.27□□□□□ -0.61
SKA3-202ENST00000314759 PATE3B3GLJ2 98 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 CDIPTO14735 213 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 MLNRO43193 412 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 MAGEA5P43359 124 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 EIF4EBP1Q13541 118 aaPredicted RBP11.26□□□□□ -0.61
SKA3-202ENST00000314759 SPINK9Q5DT21 86 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 TOMM20LQ6UXN7 152 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 Q6ZWC4 215 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 LINC01551Q86U37 167 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 ZCCHC14Q8WYQ9 949 aaKnown RBP11.26□□□□□ -0.61
SKA3-202ENST00000314759 FAM173AQ9BQD7 235 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 DERL1Q9BUN8 251 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 RTL8AQ9BWD3 113 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 GP6Q9HCN6 339 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 PXMP4Q9Y6I8 212 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 C17orf98A8MV24 154 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 C1QTNF9P0C862 333 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 MPLP40238 635 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 CEBPDP49716 269 aaPredicted RBP11.26□□□□□ -0.61
SKA3-202ENST00000314759 SSPNQ14714 243 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 ZNF146Q15072 292 aa11.26□□□□□ -0.61
SKA3-202ENST00000314759 C3AR1Q16581 482 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms