RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 CLCC1Q96S66 551 aa12.73□□□□□ -0.37
LSM1-201ENST00000311351 KLK15Q9H2R5 256 aa12.73□□□□□ -0.37
LSM1-201ENST00000311351 SDHAF2Q9NX18 166 aa12.73□□□□□ -0.37
LSM1-201ENST00000311351 METTL1Q9UBP6 276 aaKnown RBP12.73□□□□□ -0.37
LSM1-201ENST00000311351 A3GALT2U3KPV4 340 aa12.73□□□□□ -0.37
LSM1-201ENST00000311351 CCL24O00175 119 aa12.72□□□□□ -0.37
LSM1-201ENST00000311351 DIRAS3O95661 229 aa12.72□□□□□ -0.37
LSM1-201ENST00000311351 DTYMKP23919 212 aa12.72□□□□□ -0.37
LSM1-201ENST00000311351 CDX1P47902 265 aaPredicted RBP12.72□□□□□ -0.37
LSM1-201ENST00000311351 ARL6IP1Q15041 203 aa12.72□□□□□ -0.37
LSM1-201ENST00000311351 C19orf54Q5BKX5 351 aa12.72□□□□□ -0.37
LSM1-201ENST00000311351 IDNKQ5T6J7 187 aa12.72□□□□□ -0.37
LSM1-201ENST00000311351 HACD4Q5VWC8 232 aa12.72□□□□□ -0.37
LSM1-201ENST00000311351 PDPNQ86YL7 162 aa12.72□□□□□ -0.37
LSM1-201ENST00000311351 H1FOOQ8IZA3 346 aaPredicted RBP12.72□□□□□ -0.37
LSM1-201ENST00000311351 MYOZ3Q8TDC0 251 aa12.72□□□□□ -0.37
LSM1-201ENST00000311351 ABHD5Q8WTS1 349 aa12.72□□□□□ -0.37
LSM1-201ENST00000311351 C4orf3Q8WVX3 66 aa12.72□□□□□ -0.37
LSM1-201ENST00000311351 FAM103A1Q9BTL3 118 aaKnown RBP12.72□□□□□ -0.37
LSM1-201ENST00000311351 GNB4Q9HAV0 340 aa12.72□□□□□ -0.37
LSM1-201ENST00000311351 SLC35D1Q9NTN3 355 aa12.72□□□□□ -0.37
LSM1-201ENST00000311351 A0A1W2PN81 502 aa12.71□□□□□ -0.37
LSM1-201ENST00000311351 SLC25A17O43808 307 aa12.71□□□□□ -0.37
LSM1-201ENST00000311351 SSX5O60225 188 aa12.71□□□□□ -0.37
LSM1-201ENST00000311351 SOX15O60248 233 aa12.71□□□□□ -0.37
LSM1-201ENST00000311351 DUS4LO95620 317 aaKnown RBP12.71□□□□□ -0.37
LSM1-201ENST00000311351 CA2P00918 260 aa12.71□□□□□ -0.37
LSM1-201ENST00000311351 IGLV1-40P01703 118 aa12.71□□□□□ -0.37
LSM1-201ENST00000311351 CHRNA7P36544 502 aa12.71□□□□□ -0.37
LSM1-201ENST00000311351 GNG2P59768 71 aa12.71□□□□□ -0.37
LSM1-201ENST00000311351 KRTAP10-11P60412 298 aa12.71□□□□□ -0.37
LSM1-201ENST00000311351 RPS16P62249 146 aaKnown RBP12.71□□□□□ -0.37
LSM1-201ENST00000311351 SRSF7Q16629 238 aaKnown RBP eCLIP12.71□□□□□ -0.37
LSM1-201ENST00000311351 ZNF260Q3ZCT1 412 aa12.71□□□□□ -0.37
LSM1-201ENST00000311351 CASTOR1Q8WTX7 329 aa12.71□□□□□ -0.37
LSM1-201ENST00000311351 OR5B12Q96R08 314 aa12.71□□□□□ -0.37
LSM1-201ENST00000311351 ST6GALNAC5Q9BVH7 336 aa12.71□□□□□ -0.37
LSM1-201ENST00000311351 RBM7Q9Y580 266 aaKnown RBP12.71□□□□□ -0.37
LSM1-201ENST00000311351 J3QRK9 145 aa12.7□□□□□ -0.38
LSM1-201ENST00000311351 SCGNO76038 276 aa12.7□□□□□ -0.38
LSM1-201ENST00000311351 SPDEFO95238 335 aa12.7□□□□□ -0.38
LSM1-201ENST00000311351 EGR2P11161 476 aaPredicted RBP12.7□□□□□ -0.38
LSM1-201ENST00000311351 CRIP2P52943 208 aaPredicted RBP12.7□□□□□ -0.38
LSM1-201ENST00000311351 KIAA0141Q14154 515 aaPredicted RBP12.7□□□□□ -0.38
LSM1-201ENST00000311351 ZNF660Q6AZW8 331 aaPredicted RBP12.7□□□□□ -0.38
LSM1-201ENST00000311351 TMEM65Q6PI78 240 aa12.7□□□□□ -0.38
LSM1-201ENST00000311351 MINDY2Q8NBR6 621 aa12.7□□□□□ -0.38
LSM1-201ENST00000311351 TSNAXQ99598 290 aaKnown RBP12.7□□□□□ -0.38
LSM1-201ENST00000311351 RNF5Q99942 180 aa12.7□□□□□ -0.38
LSM1-201ENST00000311351 ETV7Q9Y603 341 aa12.7□□□□□ -0.38
LSM1-201ENST00000311351 IGLV2-23P01705 113 aa12.69□□□□□ -0.38
LSM1-201ENST00000311351 ZNF491Q8N8L2 437 aa12.69□□□□□ -0.38
LSM1-201ENST00000311351 BVESQ8NE79 360 aa12.69□□□□□ -0.38
LSM1-201ENST00000311351 FLYWCH2Q96CP2 140 aaKnown RBP12.69□□□□□ -0.38
LSM1-201ENST00000311351 YIPF6Q96EC8 236 aa12.69□□□□□ -0.38
LSM1-201ENST00000311351 FOXA2Q9Y261 457 aaPredicted RBP12.69□□□□□ -0.38
LSM1-201ENST00000311351 LINC00473A8K010 186 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 K7EIL1 84 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 TMEM127O75204 238 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 NFYAP23511 347 aaPredicted RBP12.68□□□□□ -0.38
LSM1-201ENST00000311351 SCAND1P57086 179 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 LSM3P62310 102 aaKnown RBP12.68□□□□□ -0.38
LSM1-201ENST00000311351 GNB1P62873 340 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 PITPNAQ00169 270 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 EGFEM1PQ0D2K5 195 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 FHL3Q13643 280 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 PPP1R27Q86WC6 154 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 GRPEL2Q8TAA5 225 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 ARPC1AQ92747 370 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 UBE2E2Q96LR5 201 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 HARBI1Q96MB7 349 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 GPR61Q9BZJ8 451 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 DCSTAMPQ9H295 470 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 VSIG4Q9Y279 399 aa12.68□□□□□ -0.38
LSM1-201ENST00000311351 TRAV18A0A075B6X5 111 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 WI2-2373I1.2A0A1W2PRP0 233 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 TRIM64CA6NLI5 447 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 I3L521 148 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 ARPC1BO15143 372 aaKnown RBP12.67□□□□□ -0.38
LSM1-201ENST00000311351 AIREO43918 545 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 PTHLHP12272 177 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 DUTP33316 252 aaKnown RBP12.67□□□□□ -0.38
LSM1-201ENST00000311351 RAB9AP51151 201 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 LUMP51884 338 aaPredicted RBP12.67□□□□□ -0.38
LSM1-201ENST00000311351 SSBP2P81877 361 aaPredicted RBP12.67□□□□□ -0.38
LSM1-201ENST00000311351 PJVKQ0ZLH3 352 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 ASPHD1Q5U4P2 390 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 UNQ5815/PRO19632Q6UWF5 114 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 ZNF562Q6V9R5 426 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 LFNGQ8NES3 379 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 OR11H1Q8NG94 326 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 DDB2Q92466 427 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 DPF1Q92782 380 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 MCRIP2Q9BUT9 160 aaKnown RBP12.67□□□□□ -0.38
LSM1-201ENST00000311351 ALX4Q9H161 411 aaPredicted RBP12.67□□□□□ -0.38
LSM1-201ENST00000311351 NUBP2Q9Y5Y2 271 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 TNCP24821 2201 aa12.67□□□□□ -0.38
LSM1-201ENST00000311351 IGKV1D-13A0A0B4J2D9 117 aa12.66□□□□□ -0.38
LSM1-201ENST00000311351 FCER2P06734 321 aa12.66□□□□□ -0.38
LSM1-201ENST00000311351 IGKV1-13P0DP09 117 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms