RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 ZNF664Q8N3J9 261 aa12.35□□□□□ -0.43
PTPN9-201ENST00000306726 OR1P1Q8NH06 330 aa12.35□□□□□ -0.43
PTPN9-201ENST00000306726 MDFIC2A0A1B0GVS7 189 aa12.35□□□□□ -0.43
PTPN9-201ENST00000306726 C9orf172C9J069 976 aa12.35□□□□□ -0.43
PTPN9-201ENST00000306726 S1PR2O95136 353 aa12.35□□□□□ -0.43
PTPN9-201ENST00000306726 CYB5R3P00387 301 aaPredicted RBP12.35□□□□□ -0.43
PTPN9-201ENST00000306726 KITLGP21583 273 aa12.35□□□□□ -0.43
PTPN9-201ENST00000306726 CCL1P22362 96 aa12.35□□□□□ -0.43
PTPN9-201ENST00000306726 CFPP27918 469 aa12.35□□□□□ -0.43
PTPN9-201ENST00000306726 SSTR5P35346 364 aa12.35□□□□□ -0.43
PTPN9-201ENST00000306726 C1QL4Q86Z23 238 aa12.35□□□□□ -0.43
PTPN9-201ENST00000306726 RPP25LQ8N5L8 163 aaKnown RBP12.35□□□□□ -0.43
PTPN9-201ENST00000306726 PRDM13Q9H4Q3 707 aa12.35□□□□□ -0.43
PTPN9-201ENST00000306726 HTD2P86397 168 aa12.35□□□□□ -0.43
PTPN9-201ENST00000306726 EXT1Q16394 746 aa12.35□□□□□ -0.43
PTPN9-201ENST00000306726 NUFIP2Q7Z417 695 aaKnown RBP12.35□□□□□ -0.43
PTPN9-201ENST00000306726 TMEM18Q96B42 140 aa12.35□□□□□ -0.43
PTPN9-201ENST00000306726 SH3BGRL2Q9UJC5 107 aa12.35□□□□□ -0.43
PTPN9-201ENST00000306726 FXYD3Q14802 87 aa12.34□□□□□ -0.43
PTPN9-201ENST00000306726 TAF15Q92804 592 aaKnown RBP eCLIP12.34□□□□□ -0.43
PTPN9-201ENST00000306726 MUC6Q6W4X9 2439 aa12.34□□□□□ -0.43
PTPN9-201ENST00000306726 IGHV3OR15-7A0A075B7D8 119 aa12.34□□□□□ -0.43
PTPN9-201ENST00000306726 IGHV1-45A0A0A0MS14 117 aa12.34□□□□□ -0.43
PTPN9-201ENST00000306726 GATCO43716 136 aaKnown RBP12.34□□□□□ -0.43
PTPN9-201ENST00000306726 COX6A1P12074 109 aa12.34□□□□□ -0.43
PTPN9-201ENST00000306726 HOXC12P31275 282 aa12.34□□□□□ -0.43
PTPN9-201ENST00000306726 SSPNQ14714 243 aa12.34□□□□□ -0.43
PTPN9-201ENST00000306726 ZNF726P1Q15940 193 aa12.34□□□□□ -0.43
PTPN9-201ENST00000306726 ZNF506Q5JVG8 444 aa12.34□□□□□ -0.43
PTPN9-201ENST00000306726 PLPPR1Q8TBJ4 325 aa12.34□□□□□ -0.43
PTPN9-201ENST00000306726 LOC102723996A0A087X1L8 192 aa12.34□□□□□ -0.43
PTPN9-201ENST00000306726 IGKV1D-33P01593 117 aa12.34□□□□□ -0.43
PTPN9-201ENST00000306726 IGKV1-33P01594 117 aa12.34□□□□□ -0.43
PTPN9-201ENST00000306726 GZMHP20718 246 aa12.34□□□□□ -0.43
PTPN9-201ENST00000306726 OR5P3Q8WZ94 311 aa12.34□□□□□ -0.43
PTPN9-201ENST00000306726 OR2H2O95918 312 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 CST2P09228 141 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 IER3P46695 156 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 FAM90A2PQ658T7 463 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 MRPL54Q6P161 138 aaKnown RBP12.33□□□□□ -0.44
PTPN9-201ENST00000306726 ABHD12Q8N2K0 398 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 SIGLEC12Q96PQ1 595 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 RAB40CQ96S21 281 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 FKBP11Q9NYL4 201 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 PITPNC1Q9UKF7 332 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 DMXL2Q8TDJ6 3036 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 PAX9P55771 341 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 DRAM1Q8N682 238 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 TMEM54Q969K7 222 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 TANC2Q9HCD6 1990 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 CEACAM18A8MTB9 384 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 RRP8O43159 456 aaKnown RBP12.33□□□□□ -0.44
PTPN9-201ENST00000306726 TIMM8AO60220 97 aaPredicted RBP12.33□□□□□ -0.44
PTPN9-201ENST00000306726 GNG3P63215 75 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 MIC13Q5XKP0 118 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 CT55Q8WUE5 264 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 SDF2L1Q9HCN8 221 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 NAT8Q9UHE5 227 aa12.33□□□□□ -0.44
PTPN9-201ENST00000306726 OR10J4P0C629 311 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 CRYGSP22914 178 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 GATA2P23769 480 aaPredicted RBP12.32□□□□□ -0.44
PTPN9-201ENST00000306726 KCNIP4Q6PIL6 250 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 DTD1Q8TEA8 209 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 APOBEC3DQ96AK3 386 aaPredicted RBP12.32□□□□□ -0.44
PTPN9-201ENST00000306726 ACTR3CQ9C0K3 210 aaPredicted RBP12.32□□□□□ -0.44
PTPN9-201ENST00000306726 PLEKHA3Q9HB20 300 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 C17orf98A8MV24 154 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 COX5AP20674 150 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 UCP3P55916 312 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 FGF12P61328 243 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 ID3Q02535 119 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 OR5I1Q13606 314 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 FAM201AQ5SY85 155 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 SLC35E3Q7Z769 313 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 SNIP1Q8TAD8 396 aaKnown RBP12.32□□□□□ -0.44
PTPN9-201ENST00000306726 SCRT1Q9BWW7 348 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 PCNX2A6NKB5 2137 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 M0R1X1 148 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 TGOLN2O43493 480 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 IGKV1-5P01602 117 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 CDC34P49427 236 aaPredicted RBP12.32□□□□□ -0.44
PTPN9-201ENST00000306726 GNG10P50151 68 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 RPL23P62829 140 aaKnown RBP12.32□□□□□ -0.44
PTPN9-201ENST00000306726 C10orf128Q5T292 105 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 REC114Q7Z4M0 266 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 MDP1Q86V88 176 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 ZNF573Q86YE8 665 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 H1FOOQ8IZA3 346 aaPredicted RBP12.32□□□□□ -0.44
PTPN9-201ENST00000306726 ZNF525Q8N782 197 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 TP53TG5Q9Y2B4 290 aa12.32□□□□□ -0.44
PTPN9-201ENST00000306726 TRAV24A0A0B4J272 114 aa12.31□□□□□ -0.44
PTPN9-201ENST00000306726 A0A1B0GU03 582 aa12.31□□□□□ -0.44
PTPN9-201ENST00000306726 F6UZH7 168 aa12.31□□□□□ -0.44
PTPN9-201ENST00000306726 OR7C2O60412 319 aa12.31□□□□□ -0.44
PTPN9-201ENST00000306726 RNF151Q2KHN1 245 aa12.31□□□□□ -0.44
PTPN9-201ENST00000306726 MRGPRGQ86SM5 289 aa12.31□□□□□ -0.44
PTPN9-201ENST00000306726 TCFL5Q9UL49 500 aa12.31□□□□□ -0.44
PTPN9-201ENST00000306726 CEP295Q9C0D2 2601 aa12.31□□□□□ -0.44
PTPN9-201ENST00000306726 MAP1AP78559 2803 aaPredicted RBP12.31□□□□□ -0.44
PTPN9-201ENST00000306726 LRP5LA4QPB2 252 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms