RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 FUT3P21217 361 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 PDCD1Q15116 288 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 C10orf128Q5T292 105 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 HEPN1Q6WQI6 88 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 Q6ZSR3 168 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 CYP2G1PQ6ZSU1 146 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 OR4C3Q8NH37 302 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 LSM10Q969L4 123 aaKnown RBP5.57□□□□□ -1.52
VPS35-201ENST00000299138 RTL8AQ9BWD3 113 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 RTN4RQ9BZR6 473 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 MRPL18Q9H0U6 180 aaKnown RBP5.57□□□□□ -1.52
VPS35-201ENST00000299138 RARRES3Q9UL19 164 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 GRIFINA4D1Z8 144 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 LIPFP07098 398 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 OR4A8P0C604 315 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 PEBP1P30086 187 aaKnown RBP5.56□□□□□ -1.52
VPS35-201ENST00000299138 EFNB2P52799 333 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 OR1L8Q8NGR8 309 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 OR1F12Q8NHA8 337 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 C5orf66Q9H5L9 145 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 TRAV8-1A0A0A6YYK1 113 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 GHRHP01286 108 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 CTLA4P16410 223 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 PSMG4Q5JS54 123 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 CPEB3Q8NE35 698 aaKnown RBP5.56□□□□□ -1.52
VPS35-201ENST00000299138 OR1N1Q8NGS0 311 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 SPRY1O43609 319 aaPredicted RBP5.56□□□□□ -1.52
VPS35-201ENST00000299138 BCL2P10415 239 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 CKS2P33552 79 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 TNFRSF9Q07011 255 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 C9orf153Q5TBE3 101 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 CLDN23Q96B33 292 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 TRBV9A0A0B4J1U6 114 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 DEFB108AA8MXU0 73 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 J3QR06 171 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 K7N7A8 449 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 ZFAND5O76080 213 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 HBBP68871 147 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 CSRP2Q16527 193 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 KIAA1644Q3SXP7 199 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 Q8IYB0 196 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 PVRP15151 417 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 ATP6V0CP27449 155 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 QRFPP83859 136 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 RPS19BP1Q86WX3 136 aaKnown RBP5.56□□□□□ -1.52
VPS35-201ENST00000299138 C11orf40Q8WZ69 217 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 AGMATQ9BSE5 352 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.56□□□□□ -1.52
VPS35-201ENST00000299138 SNRPCP09234 159 aaKnown RBP5.56□□□□□ -1.52
VPS35-201ENST00000299138 MYOGP15173 224 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 MST1LQ2TV78 715 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 FAM78AQ5JUQ0 283 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 TMEFF1Q8IYR6 380 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 GBGT1Q8N5D6 347 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 OR2K2Q8NGT1 345 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 SSMEM1Q8WWF3 244 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 RCC1LQ96I51 464 aaKnown RBP5.56□□□□□ -1.52
VPS35-201ENST00000299138 TMEM70Q9BUB7 260 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 EMC6Q9BV81 110 aa5.56□□□□□ -1.52
VPS35-201ENST00000299138 CASP8AP2Q9UKL3 1982 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 TMEM262E9PQX1 116 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 MPDU1O75352 247 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 MMP23AO75900 390 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 TNFRSF6BO95407 300 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 ACP1P24666 158 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 HOXA6P31267 233 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 TFPI2P48307 235 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 PPP1CAP62136 330 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 C2orf83Q53S99 150 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 TPTE2P1Q5T6R2 138 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 FDCSPQ8NFU4 85 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 TPSD1Q9BZJ3 242 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 TMEM222Q9H0R3 208 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 SAP30LQ9HAJ7 183 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 CDC42EP3Q9UKI2 254 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 MRPS18BQ9Y676 258 aaKnown RBP5.55□□□□□ -1.52
VPS35-201ENST00000299138 MYLKQ15746 1914 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 TSPAN2O60636 221 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 TMEM50AO95807 157 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 PAX2Q02962 417 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 C5orf47Q569G3 176 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 APCDD1LQ8NCL9 501 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 OR1K1Q8NGR3 316 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 SNRNP40Q96DI7 357 aaKnown RBP5.55□□□□□ -1.52
VPS35-201ENST00000299138 PGLYRP4Q96LB8 373 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 TMEM56Q96MV1 263 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 WDR13Q9H1Z4 485 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 FBXL15Q9H469 300 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 WDR54Q9H977 334 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 TMEM167BQ9NRX6 74 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 TMEM56-RWDD3S4R434 201 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 PLXNA4Q9HCM2 1894 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 RER1O15258 196 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 FOLR3P41439 243 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 OR52E5Q8NH55 327 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 LOXL2Q9Y4K0 774 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 NINQ8N4C6 2090 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 TRBV7-9A0A0J9YWB2 115 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 SPTY2D1-AS1A0A0U1RR47 76 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 A0A1B0GX78 115 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms