RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 HIST1H4GQ99525 98 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 DLX6P56179 175 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 OR4B1Q8NGF8 309 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 SMOC1Q9H4F8 434 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 POM121Q96HA1 1249 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 NGFRP08138 427 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 C2orf83Q53S99 150 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 THSD4Q6ZMP0 1018 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 PGLYRP3Q96LB9 341 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 SPNP16150 400 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 SUMO2P61956 95 aaKnown RBP8.1□□□□□ -1.11
CUX1-201ENST00000292535 C1orf53Q5VUE5 145 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 CEACAM4O75871 244 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 ADRA2AP08913 450 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 NAT2P11245 290 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 HOXB3P14651 431 aaPredicted RBP8.1□□□□□ -1.11
CUX1-201ENST00000292535 IL9P15248 144 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 RPL8P62917 257 aaKnown RBP8.1□□□□□ -1.11
CUX1-201ENST00000292535 C1QL3Q5VWW1 255 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 CBLN3Q6UW01 205 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 OR10AC1Q8NH08 325 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 HELZP42694 1942 aaKnown RBP8.1□□□□□ -1.11
CUX1-201ENST00000292535 CD74P04233 296 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 USP9XQ93008 2570 aaPredicted RBP8.1□□□□□ -1.11
CUX1-201ENST00000292535 PF4P02776 101 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 PSG2P11465 335 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 RBM11P57052 281 aaKnown RBP8.1□□□□□ -1.11
CUX1-201ENST00000292535 TTC32Q5I0X7 151 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 SAMD13Q5VXD3 122 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 hCG_38984A0A1B0GV85 526 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 FHL5Q5TD97 284 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 RNF133Q8WVZ7 376 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 SPTBN4Q9H254 2564 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 PQLC2Q6ZP29 291 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 TMEM70Q9BUB7 260 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 KCNE5Q9UJ90 142 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 MED19A0JLT2 244 aaPredicted RBP8.1□□□□□ -1.11
CUX1-201ENST00000292535 NPIPB11E5RHQ5 1161 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 ZNF383Q8NA42 475 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 SMRP1Q8NCR6 262 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 WNT5BQ9H1J7 359 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 PKD1L2Q7Z442 2459 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 A0A0G2JLM5 398 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 SOCS1O15524 211 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 TRGC1P0CF51 173 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 HCP5Q6MZN7 132 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 OR4C13Q8NGP0 309 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 IL36RNQ9UBH0 155 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 K7ERU9 68 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 ADAMTS17Q8TE56 1095 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 FAM131CQ96AQ9 280 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 RPL27AP46776 148 aaKnown RBP8.1□□□□□ -1.11
CUX1-201ENST00000292535 C11orf91Q3C1V1 193 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 CCL28Q9NRJ3 127 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 TMEM30AQ9NV96 361 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 RCC2Q9P258 522 aaKnown RBP8.1□□□□□ -1.11
CUX1-201ENST00000292535 RNF115Q9Y4L5 304 aa8.1□□□□□ -1.11
CUX1-201ENST00000292535 ZNF815PA8K554 130 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 HSPB1P04792 205 aaKnown RBP8.09□□□□□ -1.11
CUX1-201ENST00000292535 FGF12P61328 243 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 CX3CL1P78423 397 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 UBE2V2Q15819 145 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 EAF1Q96JC9 268 aaPredicted RBP8.09□□□□□ -1.11
CUX1-201ENST00000292535 IGHV3OR16-12A0A075B7B8 117 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 CDC42EP2O14613 210 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 ZIC1Q15915 447 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 DSPPQ9NZW4 1301 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 NAV2Q8IVL1 2488 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 FAM90A26D6RGX4 464 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 FCGR3AP08637 254 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 LCTP09848 1927 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 GPX1P07203 203 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 MMP16P51512 607 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 EWSR1Q01844 656 aaKnown RBP eCLIP8.09□□□□□ -1.112e-6■■■□□ 16.9
CUX1-201ENST00000292535 PIGYQ3MUY2 71 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 GFRA1P56159 465 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 PSG6Q00889 435 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 RECKO95980 971 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 GHRHP01286 108 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 TFPI2P48307 235 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 PMCHL2Q9BQD1 86 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 CELA2BP08218 269 aaPredicted RBP8.09□□□□□ -1.11
CUX1-201ENST00000292535 SPATA45Q537H7 98 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 VAX1Q5SQQ9 334 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 FAM214BQ7L5A3 538 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 C11orf68Q9H3H3 251 aaKnown RBP8.09□□□□□ -1.11
CUX1-201ENST00000292535 A0A1B0GTH9 108 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 GAGE10A6NGK3 116 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 UCP2P55851 309 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 ZNF56Q15929 161 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 SLC25A53Q5H9E4 307 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 VN1R4Q7Z5H5 301 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 SPNS2Q8IVW8 549 aa8.09□□□□□ -1.11
CUX1-201ENST00000292535 ATP5IP56385 69 aaPredicted RBP8.09□□□□□ -1.11
CUX1-201ENST00000292535 NCMAPQ5T1S8 102 aa8.09□□□□□ -1.12
CUX1-201ENST00000292535 FOXB2Q5VYV0 432 aa8.09□□□□□ -1.12
CUX1-201ENST00000292535 TMEM136Q6ZRR5 245 aa8.08□□□□□ -1.12
CUX1-201ENST00000292535 SFXN3Q9BWM7 321 aa8.08□□□□□ -1.12
CUX1-201ENST00000292535 NPVFQ9HCQ7 196 aa8.08□□□□□ -1.12
CUX1-201ENST00000292535 LOC105371242A0A075B767 164 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms