RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 COMMD1Q8N668 190 aa13.91□□□□□ -0.18
VPS54-201ENST00000272322 DCAF16Q9NXF7 216 aa13.91□□□□□ -0.18
VPS54-201ENST00000272322 IGHV1-18A0A0C4DH31 117 aa13.9□□□□□ -0.18
VPS54-201ENST00000272322 HNF1AP20823 631 aa13.9□□□□□ -0.18
VPS54-201ENST00000272322 FGF7P21781 194 aa13.9□□□□□ -0.18
VPS54-201ENST00000272322 RTP5Q14D33 572 aa13.9□□□□□ -0.18
VPS54-201ENST00000272322 C22orf34Q6ZV56 151 aa13.9□□□□□ -0.18
VPS54-201ENST00000272322 WNK2Q9Y3S1 2297 aa13.9□□□□□ -0.18
VPS54-201ENST00000272322 IQCF6A8MYZ5 107 aa13.9□□□□□ -0.18
VPS54-201ENST00000272322 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.9□□□□□ -0.18
VPS54-201ENST00000272322 M0R1X1 148 aa13.9□□□□□ -0.18
VPS54-201ENST00000272322 CRYAAP02489 173 aa13.9□□□□□ -0.18
VPS54-201ENST00000272322 TRGC2P03986 189 aa13.9□□□□□ -0.18
VPS54-201ENST00000272322 MDH2P40926 338 aaKnown RBP13.9□□□□□ -0.18
VPS54-201ENST00000272322 INO80CQ6PI98 192 aaPredicted RBP13.9□□□□□ -0.18
VPS54-201ENST00000272322 Q8IYB0 196 aa13.9□□□□□ -0.18
VPS54-201ENST00000272322 PATZ1Q9HBE1 687 aaKnown RBP13.9□□□□□ -0.18
VPS54-201ENST00000272322 PROCRQ9UNN8 238 aa13.9□□□□□ -0.18
VPS54-201ENST00000272322 TRAV17A0A0B4J275 112 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 GALR2O43603 387 aaPredicted RBP13.89□□□□□ -0.19
VPS54-201ENST00000272322 MYOD1P15172 320 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 PRDX2P32119 198 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 OR2V2Q96R30 315 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 TRBV23-1A0A0A0MS06 115 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 IGHV2OR16-5A0A0B4J2B6 119 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 IFNA10P01566 189 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 GNG10P50151 68 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 ACSM6Q6P461 480 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 LINC00596Q86U02 117 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 DTD1Q8TEA8 209 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 TAF15Q92804 592 aaKnown RBP eCLIP13.89□□□□□ -0.19
VPS54-201ENST00000272322 SARAFQ96BY9 339 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 TRAV3A0A0B4J244 114 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 FAM27E3Q08E93 113 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 S100PBPQ96BU1 408 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 TVP23CQ96ET8 276 aa13.89□□□□□ -0.19
VPS54-201ENST00000272322 TRAV38-1A0A0B4J264 116 aa13.88□□□□□ -0.19
VPS54-201ENST00000272322 ZNF737O75373 536 aa13.88□□□□□ -0.19
VPS54-201ENST00000272322 ZNF645Q8N7E2 425 aa13.88□□□□□ -0.19
VPS54-201ENST00000272322 QTRT1Q9BXR0 403 aaKnown RBP13.88□□□□□ -0.19
VPS54-201ENST00000272322 CXXC4Q9H2H0 198 aa13.88□□□□□ -0.19
VPS54-201ENST00000272322 MBNL3Q9NUK0 354 aaKnown RBP13.88□□□□□ -0.19
VPS54-201ENST00000272322 HCFC1P51610 2035 aa13.88□□□□□ -0.19
VPS54-201ENST00000272322 GPR12P47775 334 aa13.88□□□□□ -0.19
VPS54-201ENST00000272322 STARD4Q96DR4 205 aa13.88□□□□□ -0.19
VPS54-201ENST00000272322 WDR61Q9GZS3 305 aaKnown RBP13.88□□□□□ -0.19
VPS54-201ENST00000272322 COL27A1Q8IZC6 1860 aaPredicted RBP13.88□□□□□ -0.19
VPS54-201ENST00000272322 FFAR4Q5NUL3 377 aa13.88□□□□□ -0.19
VPS54-201ENST00000272322 ABHD12Q8N2K0 398 aa13.88□□□□□ -0.19
VPS54-201ENST00000272322 OR4F5Q8NH21 305 aa13.88□□□□□ -0.19
VPS54-201ENST00000272322 OR4F4Q96R69 305 aa13.88□□□□□ -0.19
VPS54-201ENST00000272322 OOEPA6NGQ2 149 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 OR8U8P0C7N1 319 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 PRB3Q04118 309 aaPredicted RBP13.87□□□□□ -0.19
VPS54-201ENST00000272322 RHEBQ15382 184 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 ACSF3Q4G176 576 aaPredicted RBP13.87□□□□□ -0.19
VPS54-201ENST00000272322 PTPRQQ9UMZ3 2332 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 C5orf52A6NGY3 159 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 MARCH11A6NNE9 402 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 PRSS44E7EML9 344 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 OR10P1Q8NGE3 313 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 OR51G1Q8NGK1 321 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 SMIM7Q9BQ49 75 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 DKK4Q9UBT3 224 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 A0A0U1RQK1 487 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 DUXBA0A1W2PPF3 345 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 LRRC30A6NM36 301 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 SLC31A2O15432 143 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 BCL2P10415 239 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 CATR1Q13166 79 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 SMIM21Q3B7S5 101 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 PRAMEF5Q5TYX0 476 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 CST9LP1Q5W188 147 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 SPNS3Q6ZMD2 512 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 MOB1BQ7L9L4 216 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 BHLHA15Q7RTS1 189 aaPredicted RBP13.87□□□□□ -0.19
VPS54-201ENST00000272322 IL22RA2Q969J5 263 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 MUCL1Q96DR8 90 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 ASCL3Q9NQ33 180 aa13.87□□□□□ -0.19
VPS54-201ENST00000272322 HEYLQ9NQ87 328 aaPredicted RBP13.87□□□□□ -0.19
VPS54-201ENST00000272322 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.87□□□□□ -0.19
VPS54-201ENST00000272322 KMT2EQ8IZD2 1858 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 IGKV3-15P01624 115 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 SNRPCP09234 159 aaKnown RBP13.86□□□□□ -0.19
VPS54-201ENST00000272322 OR9G9P0C7N8 305 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 CDPF1Q6NVV7 123 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 OR10G4Q8NGN3 311 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 OR10G9Q8NGN4 311 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 OR10G7Q8NGN6 311 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 ITLN1Q8WWA0 313 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 LOXL4Q96JB6 756 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 TRBV6-6A0A0A6YYG2 114 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 PGPEP1LA6NFU8 196 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 SPINT2O43291 252 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 HBE1P02100 147 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 ZNF134P52741 427 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 CCL8P80075 99 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 ELOBQ15370 118 aa13.86□□□□□ -0.19
VPS54-201ENST00000272322 SRSF7Q16629 238 aaKnown RBP eCLIP13.86□□□□□ -0.19
VPS54-201ENST00000272322 LRRC75BQ2VPJ9 315 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms