RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 A0A0G2JLM5 398 aa11.52□□□□□ -0.57
LDLR-201ENST00000252444 HSBP1L1C9JCN9 74 aa11.52□□□□□ -0.57
LDLR-201ENST00000252444 CST7O76096 145 aa11.52□□□□□ -0.57
LDLR-201ENST00000252444 EEF1AKMT3Q96AZ1 226 aa11.52□□□□□ -0.57
LDLR-201ENST00000252444 TBL2Q9Y4P3 447 aaKnown RBP11.52□□□□□ -0.57
LDLR-201ENST00000252444 WNT9BO14905 357 aa11.52□□□□□ -0.57
LDLR-201ENST00000252444 SRSF10O75494 262 aaKnown RBP11.52□□□□□ -0.57
LDLR-201ENST00000252444 SPP1P10451 314 aa11.52□□□□□ -0.57
LDLR-201ENST00000252444 POLR2GP62487 172 aaKnown RBP eCLIP11.52□□□□□ -0.57
LDLR-201ENST00000252444 ADIRFQ15847 76 aa11.52□□□□□ -0.57
LDLR-201ENST00000252444 OR5T1Q8NG75 326 aa11.52□□□□□ -0.57
LDLR-201ENST00000252444 HDHD3Q9BSH5 251 aaPredicted RBP11.52□□□□□ -0.57
LDLR-201ENST00000252444 TMEM140Q9NV12 185 aa11.52□□□□□ -0.57
LDLR-201ENST00000252444 PDGFAP04085 211 aa11.52□□□□□ -0.57
LDLR-201ENST00000252444 OR13C7P0DN81 318 aa11.52□□□□□ -0.57
LDLR-201ENST00000252444 ADAD2Q8NCV1 583 aaKnown RBP11.52□□□□□ -0.57
LDLR-201ENST00000252444 ZNF430Q9H8G1 570 aaPredicted RBP11.52□□□□□ -0.57
LDLR-201ENST00000252444 HIGD1AQ9Y241 93 aa11.52□□□□□ -0.57
LDLR-201ENST00000252444 PUS1Q9Y606 427 aaKnown RBP eCLIP11.52□□□□□ -0.57
LDLR-201ENST00000252444 FBLL1A6NHQ2 334 aaKnown RBP11.51□□□□□ -0.57
LDLR-201ENST00000252444 C12orf77C9JDV5 145 aa11.51□□□□□ -0.57
LDLR-201ENST00000252444 LCN15Q6UWW0 184 aa11.51□□□□□ -0.57
LDLR-201ENST00000252444 BMPR1BO00238 502 aa11.51□□□□□ -0.57
LDLR-201ENST00000252444 GLIPR1P48060 266 aa11.51□□□□□ -0.57
LDLR-201ENST00000252444 NPBWR2P48146 333 aa11.51□□□□□ -0.57
LDLR-201ENST00000252444 RHOVQ96L33 236 aa11.51□□□□□ -0.57
LDLR-201ENST00000252444 WFIKKN1Q96NZ8 548 aa11.51□□□□□ -0.57
LDLR-201ENST00000252444 RPH3ALQ9UNE2 315 aa11.51□□□□□ -0.57
LDLR-201ENST00000252444 MGST1P10620 155 aaKnown RBP11.51□□□□□ -0.57
LDLR-201ENST00000252444 PLA2G5P39877 138 aa11.51□□□□□ -0.57
LDLR-201ENST00000252444 ZNF418Q8TF45 676 aaPredicted RBP11.51□□□□□ -0.57
LDLR-201ENST00000252444 ZNF837Q96EG3 531 aaPredicted RBP11.51□□□□□ -0.57
LDLR-201ENST00000252444 SMIM7Q9BQ49 75 aa11.51□□□□□ -0.57
LDLR-201ENST00000252444 OR1A1Q9P1Q5 309 aa11.51□□□□□ -0.57
LDLR-201ENST00000252444 LYZL2Q7Z4W2 148 aa11.51□□□□□ -0.57
LDLR-201ENST00000252444 RNASEH2CQ8TDP1 164 aaKnown RBP11.51□□□□□ -0.57
LDLR-201ENST00000252444 SOSTQ9BQB4 213 aa11.51□□□□□ -0.57
LDLR-201ENST00000252444 NEURL2Q9BR09 285 aa11.51□□□□□ -0.57
LDLR-201ENST00000252444 TMUB1Q9BVT8 246 aa11.51□□□□□ -0.57
LDLR-201ENST00000252444 MOSP00540 346 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 CD8AP01732 235 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 FOXF2Q12947 444 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 HLA-DRB5Q30154 266 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 TEX45Q8NA69 505 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 PSMG3Q9BT73 122 aaPredicted RBP11.5□□□□□ -0.57
LDLR-201ENST00000252444 TMEM133Q9H2Q1 129 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 CLEC5AQ9NY25 188 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 IGLV1-44P01699 117 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 ARL3P36405 182 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 DRAM1Q8N682 238 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 ST6GAL2Q96JF0 529 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 AUP1Q9Y679 476 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 CABIN1Q9Y6J0 2220 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 RGS13O14921 159 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 GNLYP22749 145 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 CD1BP29016 333 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 LY6DQ14210 128 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 RCC2Q9P258 522 aaKnown RBP11.5□□□□□ -0.57
LDLR-201ENST00000252444 TMEM56-RWDD3S4R434 201 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 A0A087WV48 116 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 MARCH11A6NNE9 402 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 CELA3BP08861 270 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 PRSS12P56730 875 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 FHL1Q13642 323 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 FAM106AQ4KMX7 169 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 CACNG8Q8WXS5 425 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 P2RX4Q99571 388 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 TMEM178BH3BS89 294 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 LDLRAD4O15165 306 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 HYPMO75409 117 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 TNFRSF9Q07011 255 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 FGFRL1Q8N441 504 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 RXFP4Q8TDU9 374 aa11.5□□□□□ -0.57
LDLR-201ENST00000252444 SRSF8Q9BRL6 282 aaKnown RBP11.5□□□□□ -0.57
LDLR-201ENST00000252444 DNASE2O00115 360 aaPredicted RBP11.49□□□□□ -0.57
LDLR-201ENST00000252444 ZP3P21754 424 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 PSG9Q00887 426 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 LAMTOR1Q6IAA8 161 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 PNKDQ8N490 385 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 CXorf66Q5JRM2 361 aaPredicted RBP11.49□□□□□ -0.57
LDLR-201ENST00000252444 UBALD1Q8TB05 177 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 ANAPC16Q96DE5 110 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 ZNF835Q9Y2P0 537 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 ADAP1O75689 374 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 GUK1Q16774 197 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 ZNF788Q6ZQV5 615 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 FRZBQ92765 325 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 ZMAT5Q9UDW3 170 aaKnown RBP11.49□□□□□ -0.57
LDLR-201ENST00000252444 ELOA3CA0A087WX78 387 aaPredicted RBP11.49□□□□□ -0.57
LDLR-201ENST00000252444 ATP5G2Q06055 141 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 TMEM177Q53S58 311 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 C17orf50Q8WW18 174 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 DYRK2Q92630 601 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 METTL26Q96S19 204 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 SLC35B3Q9H1N7 401 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 VAX2Q9UIW0 290 aa11.49□□□□□ -0.57
LDLR-201ENST00000252444 PLAC9Q5JTB6 97 aa11.48□□□□□ -0.57
LDLR-201ENST00000252444 OR52E5Q8NH55 327 aa11.48□□□□□ -0.57
LDLR-201ENST00000252444 C5orf66Q9H5L9 145 aa11.48□□□□□ -0.57
LDLR-201ENST00000252444 A0A1W2PP11 408 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms