RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 UPK1BO75841 260 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 CD160O95971 181 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 PMP2P02689 132 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 COX5BP10606 129 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 CTLA4P16410 223 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 CCBE1Q6UXH8 406 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF843Q8N446 348 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 TMEM101Q96IK0 257 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 NRIP2Q9BQI9 281 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 TMEM191AQ9H0A3 160 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 SLC25A32Q9H2D1 315 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 STARD10Q9Y365 291 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 NKX2-5P52952 324 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 MFAP4P55083 255 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 TOR2AQ5JU69 321 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 DENND4AQ7Z401 1863 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 C11orf42Q8N5U0 333 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 DRAXINQ8NBI3 349 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 OR2G2Q8NGZ5 317 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 MTCH1Q9NZJ7 389 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 DKK4Q9UBT3 224 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 PLXNB1O43157 2135 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 A0A1W2PPV9 198 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 A0A1W2PQL4 384 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 ICMTO60725 284 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 FAM157CP0CG43 387 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 OR13C7P0DN81 318 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 AQP4P55087 323 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 COL5A1-AS1Q5SY13 56 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 MEGF10Q96KG7 1140 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 OR8B4Q96RC9 309 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 SYT11Q9BT88 431 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 TAS2R5Q9NYW4 299 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 LRRK1Q38SD2 2015 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 NOTCH4Q99466 2003 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 A0A1B0GV50 99 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 HRKO00198 91 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 FGF7P21781 194 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 CRYGSP22914 178 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 EMP1P54849 157 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 PNRC1Q12796 327 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 OPCMLQ14982 345 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 MRM1Q6IN84 353 aaKnown RBP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 ACOT7LQ6ZUV0 252 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 MAPK1IP1LQ8NDC0 245 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 NAA60Q9H7X0 242 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 MANBALQ9NQG1 85 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 CACNG5Q9UF02 275 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 SLC45A2Q9UMX9 530 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 MPDU1O75352 247 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 OR2J3O76001 311 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 S1PR2O95136 353 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 ISG15P05161 165 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 MLLT11Q13015 90 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 SRSF6Q13247 344 aaKnown RBP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 PRR30Q53SZ7 412 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 KLHL30-AS1Q8NEE0 82 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 MOGAT1Q96PD6 335 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 THAP7Q9BT49 309 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 HSD3B7Q9H2F3 369 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 TMEM56-RWDD3S4R434 201 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 IGHV3-72A0A0B4J1Y9 119 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 CLEC18AA5D8T8 446 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 OR4C46A6NHA9 309 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 NQO2P16083 231 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 RPS27P42677 84 aaKnown RBP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 OR2B8PP59922 312 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 RBM45Q8IUH3 476 aaKnown RBP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 CLEC18CQ8NCF0 446 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 BPESC1Q9GZL8 116 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 TANC1Q9C0D5 1861 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ISLRO14498 428 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 HOXD3P31249 432 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-218ENST00000640036 DLK1P80370 383 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 SMUG1Q53HV7 270 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 DTX1Q86Y01 620 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 PRSS3P2Q8NHM4 247 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 NTNG2Q96CW9 530 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 NIPSNAP1Q9BPW8 284 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 GPR31O00270 319 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 KLK8O60259 260 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 LIMS3P0CW19 117 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 LIMS4P0CW20 117 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF708P17019 499 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 NPPCP23582 126 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 FAM3AP98173 230 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF738Q8NE65 137 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 FBLIM1Q8WUP2 373 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 PHLDA1Q8WV24 401 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-218ENST00000640036 TVP23CQ96ET8 276 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 PMCHL2Q9BQD1 86 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 DOK5Q9P104 306 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF107Q9UII5 783 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-218ENST00000640036 GAB2Q9UQC2 676 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 TSC2P49815 1807 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ANAPC1Q9H1A4 1944 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 KIF26AQ9ULI4 1882 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-218ENST00000640036 CELA3AP09093 270 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 RFPL3SP0C7P2 107 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms