RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SCAF4O95104 1147 aaKnown RBP10.76□□□□□ -0.69
CLN3-249ENST00000636685 SERPINA2P20848 420 aa10.76□□□□□ -0.69
CLN3-249ENST00000636685 EPHA2P29317 976 aa10.76□□□□□ -0.69
CLN3-249ENST00000636685 ATP6V1E1P36543 226 aa10.76□□□□□ -0.69
CLN3-249ENST00000636685 CCR9P51686 369 aa10.76□□□□□ -0.69
CLN3-249ENST00000636685 TCTAP57738 103 aa10.76□□□□□ -0.69
CLN3-249ENST00000636685 MPV17LQ2QL34 196 aa10.76□□□□□ -0.69
CLN3-249ENST00000636685 TRAT1Q6PIZ9 186 aa10.76□□□□□ -0.69
CLN3-249ENST00000636685 LINC00596Q86U02 117 aa10.76□□□□□ -0.69
CLN3-249ENST00000636685 PARP16Q8N5Y8 322 aa10.76□□□□□ -0.69
CLN3-249ENST00000636685 CANT1Q8WVQ1 401 aa10.76□□□□□ -0.69
CLN3-249ENST00000636685 METTL9Q9H1A3 318 aa10.76□□□□□ -0.69
CLN3-249ENST00000636685 JPT1Q9UK76 154 aa10.76□□□□□ -0.69
CLN3-249ENST00000636685 WASHC3Q9Y3C0 194 aa10.76□□□□□ -0.69
CLN3-249ENST00000636685 DPPA5A6NC42 116 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 IGLL5B9A064 214 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 UBE2CO00762 179 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 ST8SIA5O15466 376 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 YPEL1O60688 119 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 RAB3AP20336 220 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 LGALS7P47929 136 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 C12orf73Q69YU5 71 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 ADGRG5Q8IZF4 528 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 GAPTQ8N292 157 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 MAPKAPK5-AS1Q8N8E1 139 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 OR2AK2Q8NG84 335 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 C11orf45Q8TAV5 145 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 FBLIM1Q8WUP2 373 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 CPNE2Q96FN4 548 aaPredicted RBP10.75□□□□□ -0.69
CLN3-249ENST00000636685 CENPNQ96H22 339 aaPredicted RBP10.75□□□□□ -0.69
CLN3-249ENST00000636685 YPEL2Q96QA6 119 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 C9orf16Q9BUW7 83 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 IL36GQ9NZH8 169 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 NDUFA13Q9P0J0 144 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 ENOPH1Q9UHY7 261 aa10.75□□□□□ -0.69
CLN3-249ENST00000636685 MCRIP1C9JLW8 97 aa10.74□□□□□ -0.69
CLN3-249ENST00000636685 MAS1P04201 325 aa10.74□□□□□ -0.69
CLN3-249ENST00000636685 APELAP0DMC3 54 aa10.74□□□□□ -0.69
CLN3-249ENST00000636685 MC5RP33032 325 aa10.74□□□□□ -0.69
CLN3-249ENST00000636685 DAPP51397 102 aa10.74□□□□□ -0.69
CLN3-249ENST00000636685 PJVKQ0ZLH3 352 aa10.74□□□□□ -0.69
CLN3-249ENST00000636685 EXOSC2Q13868 293 aaKnown RBP10.74□□□□□ -0.69
CLN3-249ENST00000636685 ZNF57Q68EA5 555 aaPredicted RBP10.74□□□□□ -0.69
CLN3-249ENST00000636685 DMKNQ6E0U4 476 aaPredicted RBP10.74□□□□□ -0.69
CLN3-249ENST00000636685 FAM71F2Q6NXP2 309 aa10.74□□□□□ -0.69
CLN3-249ENST00000636685 RNF5Q99942 180 aa10.74□□□□□ -0.69
CLN3-249ENST00000636685 MFFQ9GZY8 342 aa10.74□□□□□ -0.69
CLN3-249ENST00000636685 FBXL7Q9UJT9 491 aa10.74□□□□□ -0.69
CLN3-249ENST00000636685 ZAR1LA6NP61 321 aa10.73□□□□□ -0.69
CLN3-249ENST00000636685 FAM90A23PA8MXZ1 464 aa10.73□□□□□ -0.69
CLN3-249ENST00000636685 PPP5D1E7EU14 171 aa10.73□□□□□ -0.69
CLN3-249ENST00000636685 HLA-AP01891 365 aaKnown RBP10.73□□□□□ -0.69
CLN3-249ENST00000636685 CBLN1P23435 193 aa10.73□□□□□ -0.69
CLN3-249ENST00000636685 RPS16P62249 146 aaKnown RBP10.73□□□□□ -0.69
CLN3-249ENST00000636685 HTD2P86397 168 aa10.73□□□□□ -0.69
CLN3-249ENST00000636685 C6orf141Q5SZD1 244 aa10.73□□□□□ -0.69
CLN3-249ENST00000636685 ZNF529Q6P280 563 aa10.73□□□□□ -0.69
CLN3-249ENST00000636685 AMIGO2Q86SJ2 522 aa10.73□□□□□ -0.69
CLN3-249ENST00000636685 STPG3Q8N7X2 389 aa10.73□□□□□ -0.69
CLN3-249ENST00000636685 OR5AN1Q8NGI8 311 aa10.73□□□□□ -0.69
CLN3-249ENST00000636685 KCNG3Q8TAE7 436 aa10.73□□□□□ -0.69
CLN3-249ENST00000636685 PELI1Q96FA3 418 aa10.73□□□□□ -0.69
CLN3-249ENST00000636685 TSNAXQ99598 290 aaKnown RBP10.73□□□□□ -0.69
CLN3-249ENST00000636685 KCNIP1Q9NZI2 227 aa10.73□□□□□ -0.69
CLN3-249ENST00000636685 MLXQ9UH92 298 aa10.73□□□□□ -0.69
CLN3-249ENST00000636685 ZNF230Q9UIE0 474 aaPredicted RBP10.73□□□□□ -0.69
CLN3-249ENST00000636685 DMBT1Q9UGM3 2413 aaPredicted RBP10.73□□□□□ -0.69
CLN3-249ENST00000636685 M0R2N4 97 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 SLC16A6O15403 523 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 SPDEFO95238 335 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 IGKV1-16P04430 117 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 CPEP16870 476 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 FCGR2BP31994 310 aaPredicted RBP10.72□□□□□ -0.69
CLN3-249ENST00000636685 RHOGP84095 191 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 ANKRD55Q3KP44 614 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 LY6G6FQ5SQ64 297 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 RAB12Q6IQ22 244 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 TSEN15Q8WW01 171 aaKnown RBP10.72□□□□□ -0.69
CLN3-249ENST00000636685 THRSPQ92748 146 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 ABHD14BQ96IU4 210 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 TMEM68Q96MH6 324 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 AKIP1Q9NQ31 210 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 TAS2R4Q9NYW5 299 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 PIPOXQ9P0Z9 390 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 UBQLN2Q9UHD9 624 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 DNAH5Q8TE73 4624 aa10.72□□□□□ -0.69
CLN3-249ENST00000636685 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.71□□□□□ -0.69
CLN3-249ENST00000636685 KIR2DL5BA0A0G2JN68 375 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 KIR2DL5BA0A0G2JPC4 375 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 UBE2QL1A1L167 161 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 J3QLW9 94 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 RAB29O14966 203 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 OR2C1O95371 312 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 TNFAIP8O95379 198 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 PRH1P02810 166 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 ZNF19P17023 458 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 RPL35AP18077 110 aaKnown RBP10.71□□□□□ -0.69
CLN3-249ENST00000636685 LINC00205P59089 165 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 ATP6AP1Q15904 470 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 SLC22A6Q4U2R8 563 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 227.8 ms