RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 IGHV3-43A0A0B4J1X8 118 aa17.78■□□□□ 0.44
LIME1-210ENST00000621325 MED6O75586 246 aa17.78■□□□□ 0.44
LIME1-210ENST00000621325 IGHV2-5P01817 119 aa17.78■□□□□ 0.44
LIME1-210ENST00000621325 IGHV3-43DP0DP04 118 aa17.78■□□□□ 0.44
LIME1-210ENST00000621325 OMGP23515 440 aa17.78■□□□□ 0.44
LIME1-210ENST00000621325 NCMAPQ5T1S8 102 aa17.78■□□□□ 0.44
LIME1-210ENST00000621325 REC114Q7Z4M0 266 aa17.78■□□□□ 0.44
LIME1-210ENST00000621325 MRGPRGQ86SM5 289 aa17.78■□□□□ 0.44
LIME1-210ENST00000621325 HRH4Q9H3N8 390 aa17.78■□□□□ 0.44
LIME1-210ENST00000621325 TMPRSS5Q9H3S3 457 aa17.78■□□□□ 0.44
LIME1-210ENST00000621325 TMEM231Q9H6L2 316 aa17.78■□□□□ 0.44
LIME1-210ENST00000621325 EIF5AL1Q6IS14 154 aaKnown RBP17.78■□□□□ 0.44
LIME1-210ENST00000621325 ODF3L1Q8IXM7 274 aa17.78■□□□□ 0.44
LIME1-210ENST00000621325 RNASE11Q8TAA1 199 aaKnown RBP17.78■□□□□ 0.44
LIME1-210ENST00000621325 SMIM8Q96KF7 97 aa17.78■□□□□ 0.44
LIME1-210ENST00000621325 OR2D2Q9H210 308 aa17.78■□□□□ 0.44
LIME1-210ENST00000621325 ARV1Q9H2C2 271 aa17.78■□□□□ 0.44
LIME1-210ENST00000621325 SMG1Q96Q15 3661 aaKnown RBP17.78■□□□□ 0.44
LIME1-210ENST00000621325 IGKV1-5P01602 117 aa17.77■□□□□ 0.44
LIME1-210ENST00000621325 WNT2P09544 360 aa17.77■□□□□ 0.44
LIME1-210ENST00000621325 ID4P47928 161 aa17.77■□□□□ 0.44
LIME1-210ENST00000621325 ZNF808Q8N4W9 903 aaPredicted RBP17.77■□□□□ 0.44
LIME1-210ENST00000621325 C14orf79Q96F83 325 aa17.77■□□□□ 0.44
LIME1-210ENST00000621325 ADGRG4Q8IZF6 3080 aa17.77■□□□□ 0.44
LIME1-210ENST00000621325 USF3Q68DE3 2245 aa17.77■□□□□ 0.43
LIME1-210ENST00000621325 CHST1O43916 411 aa17.77■□□□□ 0.43
LIME1-210ENST00000621325 PITX3O75364 302 aa17.77■□□□□ 0.43
LIME1-210ENST00000621325 SULT1A2P50226 295 aa17.77■□□□□ 0.43
LIME1-210ENST00000621325 NHLH1Q02575 133 aa17.77■□□□□ 0.43
LIME1-210ENST00000621325 ARL11Q969Q4 196 aa17.77■□□□□ 0.43
LIME1-210ENST00000621325 DEFB108AA8MXU0 73 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 C16orf97H3BN30 126 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 WFDC8Q8IUA0 241 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 TMEM252Q8N6L7 170 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 ZNRF1Q8ND25 227 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 SH3BGRL3Q9H299 93 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 LYRM2Q9NU23 88 aaPredicted RBP17.76■□□□□ 0.43
LIME1-210ENST00000621325 RNF115Q9Y4L5 304 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 BTBD17A6NE02 478 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 AGAP20933 346 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 CFHR2P36980 270 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 LTC4SQ16873 150 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 ETV3LQ6ZN32 361 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 HSD17B11Q8NBQ5 300 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 PRDM13Q9H4Q3 707 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 PLEKHF2Q9H8W4 249 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 LIN7CQ9NUP9 197 aaKnown RBP17.76■□□□□ 0.43
LIME1-210ENST00000621325 ZNF835Q9Y2P0 537 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 MSRB2Q9Y3D2 182 aa17.76■□□□□ 0.43
LIME1-210ENST00000621325 KIAA1324LA8MWY0 1029 aaPredicted RBP17.75■□□□□ 0.43
LIME1-210ENST00000621325 GFRA3O60609 400 aa17.75■□□□□ 0.43
LIME1-210ENST00000621325 PAX9P55771 341 aa17.75■□□□□ 0.43
LIME1-210ENST00000621325 RPL30P62888 115 aaKnown RBP17.75■□□□□ 0.43
LIME1-210ENST00000621325 VAMP2P63027 116 aa17.75■□□□□ 0.43
LIME1-210ENST00000621325 ZNF645Q8N7E2 425 aa17.75■□□□□ 0.43
LIME1-210ENST00000621325 HIST1H2BAQ96A08 127 aa17.75■□□□□ 0.43
LIME1-210ENST00000621325 CACNG5Q9UF02 275 aa17.75■□□□□ 0.43
LIME1-210ENST00000621325 BORCS7-ASMTA0A0B4J1R7 106 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 C15orf65H3BRN8 121 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 CST7O76096 145 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 SAT2Q96F10 170 aaPredicted RBP17.74■□□□□ 0.43
LIME1-210ENST00000621325 ABHD14BQ96IU4 210 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 EGLN1Q9GZT9 426 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 TOLLIPQ9H0E2 274 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 RFNGQ9Y644 331 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 A0A1B0GU03 582 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 RAMP3O60896 148 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 LHBP01229 141 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 IGHV1-46P01743 117 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 RPS23P62266 143 aaKnown RBP17.74■□□□□ 0.43
LIME1-210ENST00000621325 ZNF295-AS1Q8N0V1 137 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 NINJ1Q92982 152 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 CLCC1Q96S66 551 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 GINS3Q9BRX5 216 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 MMP26Q9NRE1 261 aa17.74■□□□□ 0.43
LIME1-210ENST00000621325 THBDP07204 575 aa17.73■□□□□ 0.43
LIME1-210ENST00000621325 CD80P33681 288 aa17.73■□□□□ 0.43
LIME1-210ENST00000621325 BTNL3Q6UXE8 466 aa17.73■□□□□ 0.43
LIME1-210ENST00000621325 ZNF561Q8N587 486 aa17.73■□□□□ 0.43
LIME1-210ENST00000621325 PLPPR2Q96GM1 343 aa17.73■□□□□ 0.43
LIME1-210ENST00000621325 DPRXA6NFQ7 191 aa17.73■□□□□ 0.43
LIME1-210ENST00000621325 H3BP45 60 aa17.73■□□□□ 0.43
LIME1-210ENST00000621325 G0S2P27469 103 aa17.73■□□□□ 0.43
LIME1-210ENST00000621325 AKR1C3P42330 323 aa17.73■□□□□ 0.43
LIME1-210ENST00000621325 LINC00205P59089 165 aa17.73■□□□□ 0.43
LIME1-210ENST00000621325 Q6ZRG5 221 aa17.73■□□□□ 0.43
LIME1-210ENST00000621325 TGIF2LYQ8IUE0 185 aa17.73■□□□□ 0.43
LIME1-210ENST00000621325 TMEM217Q8N7C4 229 aa17.73■□□□□ 0.43
LIME1-210ENST00000621325 SPTA1P02549 2419 aa17.73■□□□□ 0.43
LIME1-210ENST00000621325 ATXN7O15265 892 aaPredicted RBP17.72■□□□□ 0.43
LIME1-210ENST00000621325 FHITP49789 147 aa17.72■□□□□ 0.43
LIME1-210ENST00000621325 EIF4EBP1Q13541 118 aaPredicted RBP17.72■□□□□ 0.43
LIME1-210ENST00000621325 LSM10Q969L4 123 aaKnown RBP17.72■□□□□ 0.43
LIME1-210ENST00000621325 GCM1Q9NP62 436 aa17.72■□□□□ 0.43
LIME1-210ENST00000621325 ELOVL5Q9NYP7 299 aa17.72■□□□□ 0.43
LIME1-210ENST00000621325 ODAMA1E959 279 aa17.72■□□□□ 0.43
LIME1-210ENST00000621325 C1QL1O75973 258 aa17.72■□□□□ 0.43
LIME1-210ENST00000621325 TNFAIP6P98066 277 aaPredicted RBP17.72■□□□□ 0.43
LIME1-210ENST00000621325 PJVKQ0ZLH3 352 aa17.72■□□□□ 0.43
LIME1-210ENST00000621325 DUX4L9Q6RFH8 374 aaPredicted RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms