RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 CREB3L1Q96BA8 519 aa7.65□□□□□ -1.18
TRIM28-208ENST00000597172 FAHD2AQ96GK7 314 aa7.65□□□□□ -1.18
TRIM28-208ENST00000597172 C5orf30Q96GV9 206 aa7.65□□□□□ -1.18
TRIM28-208ENST00000597172 ABHD14BQ96IU4 210 aa7.65□□□□□ -1.18
TRIM28-208ENST00000597172 SLC25A21Q9BQT8 299 aaPredicted RBP7.65□□□□□ -1.18
TRIM28-208ENST00000597172 RTBDNQ9BSG5 229 aaPredicted RBP7.65□□□□□ -1.18
TRIM28-208ENST00000597172 PCGF1Q9BSM1 259 aa7.65□□□□□ -1.18
TRIM28-208ENST00000597172 RSRP1Q9BUV0 290 aa7.65□□□□□ -1.18
TRIM28-208ENST00000597172 CLEC7AQ9BXN2 247 aa7.65□□□□□ -1.18
TRIM28-208ENST00000597172 MMP28Q9H239 520 aa7.65□□□□□ -1.18
TRIM28-208ENST00000597172 IFI27L2Q9H2X8 130 aa7.65□□□□□ -1.18
TRIM28-208ENST00000597172 CCL28Q9NRJ3 127 aa7.65□□□□□ -1.18
TRIM28-208ENST00000597172 TENM2Q9NT68 2774 aa7.65□□□□□ -1.18
TRIM28-208ENST00000597172 SACSQ9NZJ4 4579 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 CENPVL3A0A0U1RRI6 287 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 GATA3P23771 443 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 COX7A1P24310 79 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 HERV-K104P61576 105 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 BAMBIQ13145 260 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 EIF4EBP1Q13541 118 aaPredicted RBP7.64□□□□□ -1.19
TRIM28-208ENST00000597172 RBMS2Q15434 407 aaKnown RBP7.64□□□□□ -1.19
TRIM28-208ENST00000597172 CCBE1Q6UXH8 406 aaPredicted RBP7.64□□□□□ -1.19
TRIM28-208ENST00000597172 ZNF818PQ6ZRF7 136 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 PDZD9Q8IXQ8 264 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 ZDHHC22Q8N966 263 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 ADAD2Q8NCV1 583 aaKnown RBP7.64□□□□□ -1.19
TRIM28-208ENST00000597172 OR2AK2Q8NG84 335 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 OR13D1Q8NGV5 346 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 ENKURQ8TC29 256 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 CHPT1Q8WUD6 406 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 SECTM1Q8WVN6 248 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 EDARADDQ8WWZ3 215 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 LHX4Q969G2 390 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 TOMM40LQ969M1 308 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 ZNF251Q9BRH9 671 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 ABHD14AQ9BUJ0 271 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 SLC5A7Q9GZV3 580 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 C5orf66Q9H5L9 145 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 C7orf69Q9H7B7 122 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 HEXA-AS1Q9H8Q6 139 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 GAB2Q9UQC2 676 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 AUP1Q9Y679 476 aa7.64□□□□□ -1.19
TRIM28-208ENST00000597172 TRAV6A0A075B6T7 132 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 ODF3BA8MYP8 253 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 LY6LH3BQJ8 138 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 J3QLI3 93 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 HSD17B6O14756 317 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 ARPC1BO15143 372 aaKnown RBP7.63□□□□□ -1.19
TRIM28-208ENST00000597172 CTSDP07339 412 aaPredicted RBP7.63□□□□□ -1.19
TRIM28-208ENST00000597172 PGAM2P15259 253 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 PI3P19957 117 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 ECI1P42126 302 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 RAB7AP51149 207 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 MECP2P51608 486 aaKnown RBP7.63□□□□□ -1.19
TRIM28-208ENST00000597172 UBE2E1P51965 193 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 PRRX1P54821 245 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 LINC00205P59089 165 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 DIAPH2-AS1Q14236 149 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 SURF2Q15527 256 aaPredicted RBP7.63□□□□□ -1.19
TRIM28-208ENST00000597172 KLF17Q5JT82 389 aaPredicted RBP7.63□□□□□ -1.19
TRIM28-208ENST00000597172 ZNF626Q68DY1 528 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 LPCAT3Q6P1A2 487 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 SLC38A6Q8IZM9 456 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 CENPSQ8N2Z9 138 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 DRAM1Q8N682 238 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 BEND2Q8NDZ0 799 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 BVESQ8NE79 360 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 OR4P4Q8NGL7 312 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 ZFAND1Q8TCF1 268 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 ST6GALNAC6Q969X2 333 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 TMEM230Q96A57 120 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 UPRTQ96BW1 309 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 AJUBAQ96IF1 538 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 GPHA2Q96T91 129 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 MARVELD1Q9BSK0 173 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 OR2D2Q9H210 308 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 SDHAF2Q9NX18 166 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 COPZ2Q9P299 210 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 ZNF221Q9UK13 617 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 RBM7Q9Y580 266 aaKnown RBP7.63□□□□□ -1.19
TRIM28-208ENST00000597172 NUBP2Q9Y5Y2 271 aa7.63□□□□□ -1.19
TRIM28-208ENST00000597172 HYDINQ4G0P3 5121 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 SAA2-SAA4A0A096LPE2 208 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 A0A1W2PRD5 423 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 A0A1W2PRF3 423 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 A0A1W2PRM7 423 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 BUB1B-PAK6H3BSN5 160 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 GPR31O00270 319 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 TOR1AO14656 332 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 PGLYRP1O75594 196 aaPredicted RBP7.62□□□□□ -1.19
TRIM28-208ENST00000597172 ARG1P05089 322 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 H2AFB2P0C5Z0 115 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 SAA2P0DJI9 122 aaPredicted RBP7.62□□□□□ -1.19
TRIM28-208ENST00000597172 VSIG10L2P0DP72 767 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 ANXA7P20073 488 aaKnown RBP7.62□□□□□ -1.19
TRIM28-208ENST00000597172 RAB25P57735 213 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 DHODHQ02127 395 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 MSMO1Q15800 293 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 HLA-DRB5Q30154 266 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 PHLDA2Q53GA4 152 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms