RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 HTR2CP28335 458 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 UNC119Q13432 240 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 SRSF7Q16629 238 aaKnown RBP eCLIP9.11□□□□□ -0.95
LIG3-209ENST00000586435 GLT8D1Q68CQ7 371 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 OR10K2Q6IF99 312 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 LRRTM1Q86UE6 522 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 Q8N1Y9 231 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 DHRSXQ8N5I4 330 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 MS4A15Q8N5U1 240 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 PACRGLQ8N7B6 248 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 LFNGQ8NES3 379 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 PTX4Q96A99 478 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 ABHD14BQ96IU4 210 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 FAM103A1Q9BTL3 118 aaKnown RBP9.11□□□□□ -0.95
LIG3-209ENST00000586435 PARP12Q9H0J9 701 aaKnown RBP9.11□□□□□ -0.95
LIG3-209ENST00000586435 EDA2RQ9HAV5 297 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 PLCXD1Q9NUJ7 323 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 METTL1Q9UBP6 276 aaKnown RBP9.11□□□□□ -0.95
LIG3-209ENST00000586435 PSORS1C1Q9UIG5 152 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 MGAT4AQ9UM21 535 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 CSMD3Q7Z407 3707 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 SACSQ9NZJ4 4579 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 TMEM14DPA8MWL7 114 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 PROP1O75360 226 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 BPNT1O95861 308 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 CA2P00918 260 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 ZP3P21754 424 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 ZBTB25P24278 435 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 HLA-DRB3P79483 266 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 QRFPP83859 136 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 PSG5Q15238 335 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 MOGAT2Q3SYC2 334 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 ACSM3Q53FZ2 586 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 LAIR2Q6ISS4 152 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 AHSA2Q719I0 299 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 PDPNQ86YL7 162 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 SGPP2Q8IWX5 399 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 NANOGP1Q8N7R0 232 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 FBLIM1Q8WUP2 373 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 ISOC1Q96CN7 298 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 TSNAXQ99598 290 aaKnown RBP9.1□□□□□ -0.95
LIG3-209ENST00000586435 NICN1Q9BSH3 213 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 C11orf54Q9H0W9 315 aaPredicted RBP9.1□□□□□ -0.95
LIG3-209ENST00000586435 CHMP1AQ9HD42 196 aaPredicted RBP9.1□□□□□ -0.95
LIG3-209ENST00000586435 RANGRFQ9HD47 186 aaPredicted RBP9.1□□□□□ -0.95
LIG3-209ENST00000586435 PLEKHJ1Q9NW61 149 aa9.1□□□□□ -0.95
LIG3-209ENST00000586435 STARD9Q9P2P6 4700 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 BRI3O95415 125 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 TRGV3P03979 118 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 IGKV1-16P04430 117 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 CPEP16870 476 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 VEGFCP49767 419 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 INSL4Q14641 139 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 RBM48Q5RL73 367 aaKnown RBP9.09□□□□□ -0.95
LIG3-209ENST00000586435 RNLSQ5VYX0 342 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 ANKRD13BQ86YJ7 626 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 C8orf59Q8N0T1 100 aaPredicted RBP9.09□□□□□ -0.95
LIG3-209ENST00000586435 POC5Q8NA72 575 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 OR6M1Q8NGM8 313 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 SETD6Q8TBK2 473 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 MS4A10Q96PG2 267 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 FKBP14Q9NWM8 211 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 OR1A1Q9P1Q5 309 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 HSF4Q9ULV5 492 aa9.09□□□□□ -0.95
LIG3-209ENST00000586435 A0A0A6YYD4 124 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 A0A0G2JLM5 398 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 APOA2P02652 100 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 CEACAM6P40199 344 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 FXYD3Q14802 87 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 HAPLN4Q86UW8 402 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 FAM89BQ8N5H3 189 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 ZNF383Q8NA42 475 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.08□□□□□ -0.96
LIG3-209ENST00000586435 TMEM68Q96MH6 324 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 CLCC1Q96S66 551 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 SPATA25Q9BR10 227 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 URM1Q9BTM9 101 aaKnown RBP9.08□□□□□ -0.96
LIG3-209ENST00000586435 RSRP1Q9BUV0 290 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 LPAR5Q9H1C0 372 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 KCNK15Q9H427 330 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 Q9N2K0 584 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 C12orf4Q9NQ89 552 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 AK3Q9UIJ7 227 aa9.08□□□□□ -0.96
LIG3-209ENST00000586435 C13orf42A0A1B0GVH6 325 aa9.07□□□□□ -0.96
LIG3-209ENST00000586435 FOXI3A8MTJ6 420 aaPredicted RBP9.07□□□□□ -0.96
LIG3-209ENST00000586435 H0Y980 276 aa9.07□□□□□ -0.96
LIG3-209ENST00000586435 SLC25A17O43808 307 aa9.07□□□□□ -0.96
LIG3-209ENST00000586435 GNAO1P09471 354 aa9.07□□□□□ -0.96
LIG3-209ENST00000586435 UCHL1P09936 223 aa9.07□□□□□ -0.96
LIG3-209ENST00000586435 SRMP19623 302 aa9.07□□□□□ -0.96
LIG3-209ENST00000586435 RPS16P62249 146 aaKnown RBP9.07□□□□□ -0.96
LIG3-209ENST00000586435 SSBP2P81877 361 aaPredicted RBP9.07□□□□□ -0.96
LIG3-209ENST00000586435 KLF5Q13887 457 aaPredicted RBP9.07□□□□□ -0.96
LIG3-209ENST00000586435 HSD17B12Q53GQ0 312 aa9.07□□□□□ -0.96
LIG3-209ENST00000586435 DRAXINQ8NBI3 349 aaPredicted RBP9.07□□□□□ -0.96
LIG3-209ENST00000586435 OR9G4Q8NGQ1 327 aa9.07□□□□□ -0.96
LIG3-209ENST00000586435 GRPEL2Q8TAA5 225 aa9.07□□□□□ -0.96
LIG3-209ENST00000586435 HDHD3Q9BSH5 251 aaPredicted RBP9.07□□□□□ -0.96
LIG3-209ENST00000586435 THAP7Q9BT49 309 aaPredicted RBP9.07□□□□□ -0.96
LIG3-209ENST00000586435 MND1Q9BWT6 205 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms