RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 KLK2P20151 261 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 AGAP20933 346 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 CD1BP29016 333 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 FCGR2BP31994 310 aaPredicted RBP2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 LHX2P50458 406 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 DLX6P56179 175 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 ISL1P61371 349 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 SRSF6Q13247 344 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 HMGN3Q15651 99 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 PRR30Q53SZ7 412 aaPredicted RBP2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 PLAC9Q5JTB6 97 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 FFAR4Q5NUL3 377 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 PRSS45Q7RTY3 260 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 LRRTM1Q86UE6 522 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 FAM90A1Q86YD7 464 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 PHC2Q8IXK0 858 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 MAPK1IP1LQ8NDC0 245 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 MBD3L2Q8NHZ7 208 aaPredicted RBP2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 MRPL30Q8TCC3 161 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 GTF3AQ92664 365 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 ARPC1AQ92747 370 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 RBPMSQ93062 196 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 TMEM54Q969K7 222 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 PGLYRP3Q96LB9 341 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 PAXXQ9BUH6 204 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 C20orf27Q9GZN8 174 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 C11orf54Q9H0W9 315 aaPredicted RBP2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 PLAC1Q9HBJ0 212 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 SEPSECSQ9HD40 501 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 NRN1Q9NPD7 142 aa2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 RCL1Q9Y2P8 373 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-203ENST00000577880 IGKV1-8A0A0C4DH67 115 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 ZNF727A8MUV8 499 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 CDRT15L2A8MXV6 281 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 ZIC3O60481 467 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 CEACAM4O75871 244 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 CST7O76096 145 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 ZFPL1O95159 310 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 TCRBP04435 133 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 SMIM10L1P0DMW3 83 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 MAGEB1P43366 347 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 RBM11P57052 281 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 SRSF4Q08170 494 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 SP6Q3SY56 376 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 NCMAPQ5T1S8 102 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 FAM78BQ5VT40 261 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 LCNL1Q6ZST4 164 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 LYSMD2Q8IV50 215 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 GBGT1Q8N5D6 347 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 ZNF525Q8N782 197 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 FAM216BQ8N7L0 139 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 TMEM229BQ8NBD8 167 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 ZNRF1Q8ND25 227 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 PXT1Q8NFP0 134 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 MRAPQ8TCY5 172 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 RGP1Q92546 391 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 SMIM10Q96HG1 83 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 QTRT1Q9BXR0 403 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 GABARAPL3Q9BY60 117 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 NKX6-2Q9C056 277 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 WNT5BQ9H1J7 359 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 ST6GALNAC2Q9UJ37 374 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 LINC00312Q9Y6C7 94 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 IGHV3-35A0A0C4DH35 117 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 IGKV3OR2-268A0A0C4DH90 116 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 HMX2A2RU54 273 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 CGB1A6NKQ9 187 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 C1orf196B1AJZ1 125 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 ISLRO14498 428 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 SYNGR2O43760 224 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 IGKV1D-16P01601 117 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 CD3DP04234 171 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 GABRB1P18505 474 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 PSMB6P28072 239 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 SULT1A2P50226 295 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 SCAND1P57086 179 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 ERVFC1-1P60608 527 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 SPCS3P61009 180 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 UBE2MP61081 183 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 CDK5Q00535 292 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 PSG9Q00887 426 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 WDR25Q64LD2 544 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 H3F3CQ6NXT2 135 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 PRSS54Q6PEW0 395 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 GLDNQ6ZMI3 551 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 ZDHHC22Q8N966 263 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 SLC24A4Q8NFF2 622 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 TMEM167AQ8TBQ9 72 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 FBLIM1Q8WUP2 373 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 YIPF5Q969M3 257 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 RPUSD4Q96CM3 377 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 GALNT14Q96FL9 552 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 TMEM101Q96IK0 257 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 MMP28Q9H239 520 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 FBXL15Q9H469 300 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 NAA60Q9H7X0 242 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 RANGRFQ9HD47 186 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 CCL28Q9NRJ3 127 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 RPRMQ9NS64 109 aa2.49□□□□□ -2.01
SMCHD1-203ENST00000577880 SPRR3Q9UBC9 169 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms