RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 RAB4BP61018 213 aa12.28□□□□□ -0.44
VPS35-210ENST00000568784 RPL23P62829 140 aaKnown RBP12.28□□□□□ -0.44
VPS35-210ENST00000568784 Q3ZCU0 254 aa12.28□□□□□ -0.44
VPS35-210ENST00000568784 ZNF318Q5VUA4 2279 aa12.28□□□□□ -0.44
VPS35-210ENST00000568784 ACSM6Q6P461 480 aa12.28□□□□□ -0.44
VPS35-210ENST00000568784 NUFIP2Q7Z417 695 aaKnown RBP12.28□□□□□ -0.44
VPS35-210ENST00000568784 CBLN4Q9NTU7 201 aa12.28□□□□□ -0.44
VPS35-210ENST00000568784 DVL1O14640 695 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 SERF2P84101 59 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 PRSS8Q16651 343 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 LRRC75BQ2VPJ9 315 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 GCSAMLQ5JQS6 135 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 TDHQ8IZJ6 230 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 CNEP1R1Q8N9A8 125 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 ABI3Q9P2A4 366 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 TRAPPC1Q9Y5R8 145 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 HEATR1Q9H583 2144 aaKnown RBP12.27□□□□□ -0.44
VPS35-210ENST00000568784 LOC102723996A0A087X1L8 192 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 LY6G6EA0A0G2JKS1 128 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 IGKV1D-33P01593 117 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 IGKV1-33P01594 117 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 DUSP3P51452 185 aaPredicted RBP12.27□□□□□ -0.44
VPS35-210ENST00000568784 CATR1Q13166 79 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 HAPLN4Q86UW8 402 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 TMEM183AQ8IXX5 376 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 DTD1Q8TEA8 209 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 RTL8AQ9BWD3 113 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 PSG11Q9UQ72 335 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 U3KQA8 63 aa12.27□□□□□ -0.44
VPS35-210ENST00000568784 SH2D1BO14796 132 aa12.27□□□□□ -0.45
VPS35-210ENST00000568784 S1PR2O95136 353 aa12.27□□□□□ -0.45
VPS35-210ENST00000568784 THBS3P49746 956 aa12.27□□□□□ -0.45
VPS35-210ENST00000568784 Q0VFX4 171 aa12.27□□□□□ -0.45
VPS35-210ENST00000568784 DMRTC2Q8IXT2 367 aaPredicted RBP12.27□□□□□ -0.45
VPS35-210ENST00000568784 NEIL1Q96FI4 390 aaPredicted RBP12.27□□□□□ -0.45
VPS35-210ENST00000568784 TCAPO15273 167 aa12.27□□□□□ -0.45
VPS35-210ENST00000568784 DNPH1O43598 174 aa12.27□□□□□ -0.45
VPS35-210ENST00000568784 DPPA3Q6W0C5 159 aa12.27□□□□□ -0.45
VPS35-210ENST00000568784 PPP1R32Q7Z5V6 425 aa12.27□□□□□ -0.45
VPS35-210ENST00000568784 CT55Q8WUE5 264 aa12.27□□□□□ -0.45
VPS35-210ENST00000568784 GALMQ96C23 342 aa12.27□□□□□ -0.45
VPS35-210ENST00000568784 GNG12Q9UBI6 72 aa12.27□□□□□ -0.45
VPS35-210ENST00000568784 GRIFINA4D1Z8 144 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 WNT9BO14905 357 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 LYZL6O75951 148 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 NDUFB4O95168 129 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 ARR3P36575 388 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 CDC34P49427 236 aaPredicted RBP12.26□□□□□ -0.45
VPS35-210ENST00000568784 ALKBH6Q3KRA9 238 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 MDP1Q86V88 176 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 SRD5A3Q9H8P0 318 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 LOXL2Q9Y4K0 774 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 PKDREJQ9NTG1 2253 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 MDFIC2A0A1B0GVS7 189 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 TGOLN2O43493 480 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 KBTBD11O94819 623 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 FABP6P51161 128 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 CD81P60033 236 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 TNFRSF9Q07011 255 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 OR1C1Q15619 314 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 CTDSP1Q9GZU7 261 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 RNF212BA8MTL3 300 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 ST8SIA5O15466 376 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 C6orf15Q6UXA7 325 aaPredicted RBP12.26□□□□□ -0.45
VPS35-210ENST00000568784 OR5P3Q8WZ94 311 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 YPEL4Q96NS1 127 aa12.26□□□□□ -0.45
VPS35-210ENST00000568784 NBEAQ8NFP9 2946 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 CTXND1A0A1B0GTU2 59 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 SSMEM1Q8WWF3 244 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 C11orf1Q9H5F2 150 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.25□□□□□ -0.45
VPS35-210ENST00000568784 FAM90A10PA6NDY2 464 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 FAM90A18PA6NE21 464 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 FAM90A16PA6NEW6 464 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 FAM90A20PA6NIJ5 464 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 FAM90A8PA6NJQ4 464 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 FAM90A7PA6NKC0 464 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 FAM90A22PA8MWA6 464 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 FAM90A12PA8MX19 464 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 FAM90A5PA8MXJ8 464 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 FAM90A23PA8MXZ1 464 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 FAM90A15PP0C7V4 464 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 FAM90A13PP0C7W8 464 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 FAM90A14PP0C7W9 464 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 FAM90A24PP0C7X0 464 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 CEACAM1P13688 526 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 GZMHP20718 246 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 ABLIM2Q6H8Q1 611 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 ZNF664Q8N3J9 261 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 TMEM147Q9BVK8 224 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 SAMD10Q9BYL1 202 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 GCM1Q9NP62 436 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 PCNX1Q96RV3 2341 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 ATG2AQ2TAZ0 1938 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 J3QT63 122 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 HRASP01112 189 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 CELA3BP08861 270 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 PPP1CBP62140 327 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 MRPL49Q13405 166 aaKnown RBP12.25□□□□□ -0.45
VPS35-210ENST00000568784 PRAMEF5Q5TYX0 476 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms