RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 L3HYPDHQ96EM0 354 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 SLC45A3Q96JT2 553 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 BTN2A3PQ96KV6 586 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 RDH12Q96NR8 316 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 SIGLEC12Q96PQ1 595 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 RNF157Q96PX1 679 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 SPACA5Q96QH8 159 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 ARHGDIGQ99819 225 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 SUCNR1Q9BXA5 334 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 GNB1LQ9BYB4 327 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 SELENOIQ9C0D9 397 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 OR11A1Q9GZK7 315 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 SLIRPQ9GZT3 109 aaKnown RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 RNASE7Q9H1E1 156 aaKnown RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 ZNF696Q9H7X3 374 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 ZNF702PQ9H963 129 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 RRAGDQ9NQL2 400 aaPredicted RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 MRPL27Q9P0M9 148 aaKnown RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 GSKIPQ9P0R6 139 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 TAAR2Q9P1P5 351 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 JPT1Q9UK76 154 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 DKKL1Q9UK85 242 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 POU2F3Q9UKI9 436 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 VSIG4Q9Y279 399 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.25□□□□□ -2.05
VPS35-209ENST00000568642 YTHDF2Q9Y5A9 579 aaKnown RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 PLCE1Q9P212 2302 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 ANAPC1Q9H1A4 1944 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 A0A087X002 238 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 TRAV39A0A0B4J263 110 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 TRGV8A0A0C4DH27 118 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 IGHV3-16A0A0C4DH30 117 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 FAM236DA0A1B0GTK5 79 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 A0A1W2PRG6 482 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 DAPL1A0PJW8 107 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 MPTX1A8MV57 137 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 UPK1AO00322 258 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 SAP18O00422 153 aaKnown RBP2.24□□□□□ -2.05
VPS35-209ENST00000568642 PDCD6O75340 191 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 TRMUO75648 421 aaKnown RBP2.24□□□□□ -2.05
VPS35-209ENST00000568642 OR7C1O76099 320 aaPredicted RBP2.24□□□□□ -2.05
VPS35-209ENST00000568642 SOX14O95416 240 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 TRBV12-3P01733 135 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 IGHMP01871 453 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 OR5G3P0C626 314 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 SLC35G6P0C7Q6 338 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 C1GALT1C1LP0DN25 315 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 FAM236CP0DP71 79 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 CCL1P22362 96 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 OMGP23515 440 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 CERS1P27544 350 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 CHRNB4P30926 498 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 GGT2P36268 569 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 NDUFV3P56181 108 aaKnown RBP2.24□□□□□ -2.05
VPS35-209ENST00000568642 ERVK-16P61578 105 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 RPS21P63220 83 aaKnown RBP2.24□□□□□ -2.05
VPS35-209ENST00000568642 ARG2P78540 354 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 SLC7A9P82251 487 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 EGFEM1PQ0D2K5 195 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 ZNF266Q14584 549 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 ZNF146Q15072 292 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 PDGFRLQ15198 375 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 DEFB113Q30KQ7 82 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 LIN52Q52LA3 116 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 MESTQ5EB52 335 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 TTC32Q5I0X7 151 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 TMEM255AQ5JRV8 349 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 ZNF506Q5JVG8 444 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 C1orf100Q5SVJ3 147 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 FBXL22Q6P050 247 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 TNFAIP8L2Q6P589 184 aaPredicted RBP2.24□□□□□ -2.05
VPS35-209ENST00000568642 SMARCD3Q6STE5 483 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 FBXW12Q6X9E4 464 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 ZNF620Q6ZNG0 422 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 C3orf62Q6ZUJ4 267 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 YTHDF3Q7Z739 585 aaKnown RBP2.24□□□□□ -2.05
VPS35-209ENST00000568642 NFE4Q86UQ8 179 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 DOLPP1Q86YN1 238 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 ZNF567Q8N184 647 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 UMODL1-AS1Q8N2C9 162 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 ZNF561Q8N587 486 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 ZIC4Q8N9L1 334 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 CSNK1G2-AS1Q8NCQ2 148 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 OR10D3Q8NH80 312 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 ZNRF2Q8NHG8 242 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 DYDC1Q8WWB3 177 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 ZNF524Q96C55 264 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 RILPQ96NA2 401 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 PRSS27Q9BQR3 290 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 FAAP24Q9BTP7 215 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 C1orf50Q9BV19 199 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 MROQ9BYG7 248 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 SRMSQ9H3Y6 488 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 C14orf166Q9Y224 244 aaKnown RBP2.24□□□□□ -2.05
VPS35-209ENST00000568642 SIGLEC7Q9Y286 467 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 PKIGQ9Y2B9 76 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 PYGO1Q9Y3Y4 419 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 RFNGQ9Y644 331 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 V9GY05 133 aa2.24□□□□□ -2.05
VPS35-209ENST00000568642 PTPRJQ12913 1337 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms