RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 FBXL19-AS1Q494R0 122 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 FAM162BQ5T6X4 162 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 C1orf195Q5TG92 126 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 TRIQKQ629K1 86 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 OR10K2Q6IF99 312 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 UGT2A3Q6UWM9 527 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 CLEC19AQ6UXS0 136 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 DGAT2L6Q6ZPD8 337 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 LRRC25Q8N386 305 aaPredicted RBP0.81□□□□□ -2.28
VPS35-207ENST00000568191 MUC15Q8N387 334 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 TMEM86BQ8N661 226 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 CLDN22Q8N7P3 220 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.81□□□□□ -2.28
VPS35-207ENST00000568191 TMEM161BQ8NDZ6 487 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 OR51D1Q8NGF3 324 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 OR4P4Q8NGL7 312 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 OR1L8Q8NGR8 309 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 OR1S1Q8NH92 325 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 SPPL2BQ8TCT7 592 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 EEF1AKMT1Q8WVE0 214 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 CYGBQ8WWM9 190 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 PYDC1Q8WXC3 89 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 TAMM41Q96BW9 452 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 SNF8Q96H20 258 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 FMC1Q96HJ9 113 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 SMIM8Q96KF7 97 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 QKIQ96PU8 341 aaKnown RBP eCLIP0.81□□□□□ -2.28
VPS35-207ENST00000568191 SPACA5Q96QH8 159 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 PEBP4Q96S96 227 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 PHB2Q99623 299 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 MED18Q9BUE0 208 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 TIPINQ9BVW5 301 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 SUCNR1Q9BXA5 334 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 PECRQ9BY49 303 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 MROQ9BYG7 248 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 TBL1XR1Q9BZK7 514 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 CHST5Q9GZS9 411 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 SLC25A31Q9H0C2 315 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 OR51E2Q9H255 320 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 POMKQ9H5K3 350 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 DMAC2Q9NW81 257 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 VPS29Q9UBQ0 182 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 SMPXQ9UHP9 88 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 DKKL1Q9UK85 242 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 FBXO5Q9UKT4 447 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 POLR1DQ9Y2S0 133 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 ICOSQ9Y6W8 199 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 SYNMO15061 1565 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 NRCAMQ92823 1304 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 OTOFQ9HC10 1997 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 NPHP4O75161 1426 aaPredicted RBP0.81□□□□□ -2.28
VPS35-207ENST00000568191 PIK3C2GO75747 1445 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 NCOA3Q9Y6Q9 1424 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 PLXND1Q9Y4D7 1925 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 KMT2BQ9UMN6 2715 aaPredicted RBP0.8□□□□□ -2.28
VPS35-207ENST00000568191 TRAV8-2A0A0B4J237 113 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 A0A0B4J2C4 111 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 TEX50A0A1B0GTY4 177 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 LOC389332A0A1B0GUA5 103 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 MYBPHLA2RUH7 354 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 PGPA6NDG6 321 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 FAM159BA6NKW6 160 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 GGTLC3B5MD39 225 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 DISC1C4P0D8 188 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 H3BP45 60 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 K7EQS6 105 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 M0QYV0 167 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 UPK1AO00322 258 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 UPK2O00526 184 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 NOS1APO75052 506 aaPredicted RBP0.8□□□□□ -2.28
VPS35-207ENST00000568191 OR2B3O76000 313 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 EPPINO95925 133 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 CXorf1O96002 111 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 HMGN1P05114 100 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 REG1AP05451 166 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 LINC00614P0C842 121 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 CYBAP13498 195 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 KCNE1P15382 129 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 CXCL2P19875 107 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 CXCL3P19876 107 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 SLC6A1P30531 599 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 AGTR1P30556 359 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 ALDH3A1P30838 453 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 REG1BP48304 166 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 ERFP50548 548 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 ZNF83P51522 516 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 CRYBA4P53673 196 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 CCL23P55773 120 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 RAB25P57735 213 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 TAS2R41P59536 307 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 C1QTNF8P60827 252 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 RAB5BP61020 215 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 PSME3P61289 254 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 SLC35A2P78381 396 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 BTN3A2P78410 334 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 GTF2BQ00403 316 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 EMX1Q04741 257 aaPredicted RBP0.8□□□□□ -2.28
VPS35-207ENST00000568191 PMVKQ15126 192 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 RSU1Q15404 277 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 Q499Y3 187 aa0.8□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms