RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 UBE2KP61086 200 aa16.86■□□□□ 0.29
CLN3-230ENST00000568076 PRR30Q53SZ7 412 aaPredicted RBP16.86■□□□□ 0.29
CLN3-230ENST00000568076 GFRALQ6UXV0 394 aa16.86■□□□□ 0.29
CLN3-230ENST00000568076 PPP1R35Q8TAP8 253 aa16.86■□□□□ 0.29
CLN3-230ENST00000568076 FAM90A26D6RGX4 464 aa16.85■□□□□ 0.29
CLN3-230ENST00000568076 K7ENP7 123 aa16.85■□□□□ 0.29
CLN3-230ENST00000568076 DFFBO76075 338 aa16.85■□□□□ 0.29
CLN3-230ENST00000568076 PPT1P50897 306 aa16.85■□□□□ 0.29
CLN3-230ENST00000568076 TAS2R30P59541 319 aa16.85■□□□□ 0.29
CLN3-230ENST00000568076 TNFAIP6P98066 277 aaPredicted RBP16.85■□□□□ 0.29
CLN3-230ENST00000568076 ZNF66Q6ZN08 573 aa16.85■□□□□ 0.29
CLN3-230ENST00000568076 CBLN2Q8IUK8 224 aa16.85■□□□□ 0.29
CLN3-230ENST00000568076 NUP37Q8NFH4 326 aa16.85■□□□□ 0.29
CLN3-230ENST00000568076 FAM222BQ8WU58 562 aa16.85■□□□□ 0.29
CLN3-230ENST00000568076 USF3Q68DE3 2245 aa16.85■□□□□ 0.29
CLN3-230ENST00000568076 CUL9Q8IWT3 2517 aa16.85■□□□□ 0.29
CLN3-230ENST00000568076 C16orf97H3BN30 126 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 GPR37O15354 613 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 LOXL3P58215 753 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 SELENOVP59797 346 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 CCL20P78556 96 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 TNFRSF9Q07011 255 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 MORN2Q502X0 79 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 SPSB3Q6PJ21 355 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 DUX4L9Q6RFH8 374 aaPredicted RBP16.84■□□□□ 0.29
CLN3-230ENST00000568076 RBKSQ9H477 322 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 HSPB7Q9UBY9 170 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 IL19Q9UHD0 177 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 ZNF835Q9Y2P0 537 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 PIEZO2Q9H5I5 2752 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 EDDM3BP56851 147 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 PEA15Q15121 130 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 SP5Q6BEB4 398 aaPredicted RBP16.84■□□□□ 0.29
CLN3-230ENST00000568076 DHRS7BQ6IAN0 325 aaPredicted RBP16.84■□□□□ 0.29
CLN3-230ENST00000568076 ZNF525Q8N782 197 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 SNRNP40Q96DI7 357 aaKnown RBP16.84■□□□□ 0.29
CLN3-230ENST00000568076 EIF5A2Q9GZV4 153 aaKnown RBP16.84■□□□□ 0.29
CLN3-230ENST00000568076 RNF7Q9UBF6 113 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 GNG12Q9UBI6 72 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 JPT1Q9UK76 154 aa16.84■□□□□ 0.29
CLN3-230ENST00000568076 MAP1BP46821 2468 aaKnown RBP16.83■□□□□ 0.29
CLN3-230ENST00000568076 LRRC30A6NM36 301 aa16.83■□□□□ 0.28
CLN3-230ENST00000568076 CYB5R3P00387 301 aaPredicted RBP16.83■□□□□ 0.28
CLN3-230ENST00000568076 CGB3P0DN86 165 aa16.83■□□□□ 0.28
CLN3-230ENST00000568076 CGB7P0DN87 165 aa16.83■□□□□ 0.28
CLN3-230ENST00000568076 SPANXN5Q5MJ07 72 aa16.83■□□□□ 0.28
CLN3-230ENST00000568076 TMEM108Q6UXF1 575 aa16.83■□□□□ 0.28
CLN3-230ENST00000568076 THNSL2Q86YJ6 484 aa16.83■□□□□ 0.28
CLN3-230ENST00000568076 TGIF2LYQ8IUE0 185 aa16.83■□□□□ 0.28
CLN3-230ENST00000568076 TCTEX1D1Q8N7M0 179 aa16.83■□□□□ 0.28
CLN3-230ENST00000568076 CLRN3Q8NCR9 226 aa16.83■□□□□ 0.28
CLN3-230ENST00000568076 HSD17B10Q99714 261 aaKnown RBP16.83■□□□□ 0.28
CLN3-230ENST00000568076 ELOVL5Q9NYP7 299 aa16.83■□□□□ 0.28
CLN3-230ENST00000568076 JKAMPQ9P055 326 aa16.83■□□□□ 0.28
CLN3-230ENST00000568076 FBXO7Q9Y3I1 522 aa16.83■□□□□ 0.28
CLN3-230ENST00000568076 DIDO1Q9BTC0 2240 aaKnown RBP16.83■□□□□ 0.28
CLN3-230ENST00000568076 DPRXA6NFQ7 191 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 F2RL2O00254 374 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 CLDN14O95500 239 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 THBDP07204 575 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 NFYBP25208 207 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 ZNF134P52741 427 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 UTF1Q5T230 341 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 NCR3LG1Q68D85 454 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 WFDC8Q8IUA0 241 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 EDARADDQ8WWZ3 215 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 ZGRF1Q86YA3 2104 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 PLCE1Q9P212 2302 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 YPEL1O60688 119 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 IFNA5P01569 189 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 IGHV3-7P01780 117 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 STUMQ69YW2 141 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 LFNGQ8NES3 379 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 C14orf79Q96F83 325 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 YPEL2Q96QA6 119 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 CEP295Q9C0D2 2601 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 DSCAMO60469 2012 aa16.82■□□□□ 0.28
CLN3-230ENST00000568076 RAB29O14966 203 aa16.81■□□□□ 0.28
CLN3-230ENST00000568076 DUTP33316 252 aaKnown RBP16.81■□□□□ 0.28
CLN3-230ENST00000568076 GPR12P47775 334 aa16.81■□□□□ 0.28
CLN3-230ENST00000568076 ZNF561Q8N587 486 aa16.81■□□□□ 0.28
CLN3-230ENST00000568076 RSG1Q9BU20 258 aa16.81■□□□□ 0.28
CLN3-230ENST00000568076 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.81■□□□□ 0.28
CLN3-230ENST00000568076 DCAF16Q9NXF7 216 aa16.81■□□□□ 0.28
CLN3-230ENST00000568076 CALYQ9NYX4 217 aa16.81■□□□□ 0.28
CLN3-230ENST00000568076 KPTNQ9Y664 436 aa16.81■□□□□ 0.28
CLN3-230ENST00000568076 A0A1B0GW64 132 aa16.8■□□□□ 0.28
CLN3-230ENST00000568076 PTAFRP25105 342 aa16.8■□□□□ 0.28
CLN3-230ENST00000568076 C17orf58Q2M2W7 97 aa16.8■□□□□ 0.28
CLN3-230ENST00000568076 AKR1C8PQ5T2L2 129 aa16.8■□□□□ 0.28
CLN3-230ENST00000568076 TMEM14EPQ6UXP3 125 aa16.8■□□□□ 0.28
CLN3-230ENST00000568076 Q8TCH9 128 aa16.8■□□□□ 0.28
CLN3-230ENST00000568076 SDSLQ96GA7 329 aa16.8■□□□□ 0.28
CLN3-230ENST00000568076 RARRES2Q99969 163 aa16.8■□□□□ 0.28
CLN3-230ENST00000568076 ICE1Q9Y2F5 2266 aa16.8■□□□□ 0.28
CLN3-230ENST00000568076 PPIHO43447 177 aaKnown RBP16.8■□□□□ 0.28
CLN3-230ENST00000568076 H2AFB1P0C5Y9 115 aa16.8■□□□□ 0.28
CLN3-230ENST00000568076 SLC25A24Q6NUK1 477 aa16.8■□□□□ 0.28
CLN3-230ENST00000568076 DEFB108BQ8NET1 73 aa16.8■□□□□ 0.28
CLN3-230ENST00000568076 PBDC1Q9BVG4 233 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms