RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 ALG8Q9BVK2 526 aa12.53□□□□□ -0.4
CDH3-205ENST00000566808 ARL2BPQ9Y2Y0 163 aa12.53□□□□□ -0.4
CDH3-205ENST00000566808 LRRC42Q9Y546 428 aa12.53□□□□□ -0.4
CDH3-205ENST00000566808 DYNC1H1Q14204 4646 aaKnown RBP12.52□□□□□ -0.41
CDH3-205ENST00000566808 FAM90A7PA6NKC0 464 aa12.52□□□□□ -0.41
CDH3-205ENST00000566808 FAM90A23PA8MXZ1 464 aa12.52□□□□□ -0.41
CDH3-205ENST00000566808 H3BNX3 289 aa12.52□□□□□ -0.41
CDH3-205ENST00000566808 GPX5O75715 221 aa12.52□□□□□ -0.41
CDH3-205ENST00000566808 IGKV1-16P04430 117 aa12.52□□□□□ -0.41
CDH3-205ENST00000566808 GLAP06280 429 aa12.52□□□□□ -0.41
CDH3-205ENST00000566808 EXOSC2Q13868 293 aaKnown RBP12.52□□□□□ -0.41
CDH3-205ENST00000566808 ANKRD55Q3KP44 614 aa12.52□□□□□ -0.41
CDH3-205ENST00000566808 TMEM61Q8N0U2 210 aa12.52□□□□□ -0.41
CDH3-205ENST00000566808 THRSPQ92748 146 aa12.52□□□□□ -0.41
CDH3-205ENST00000566808 CIB1Q99828 191 aa12.52□□□□□ -0.41
CDH3-205ENST00000566808 GABARAPL3Q9BY60 117 aa12.52□□□□□ -0.41
CDH3-205ENST00000566808 GABARAPL1Q9H0R8 117 aa12.52□□□□□ -0.41
CDH3-205ENST00000566808 TCRBV3S1A0A5B6 114 aa12.51□□□□□ -0.41
CDH3-205ENST00000566808 FAM223BA6NKX1 122 aa12.51□□□□□ -0.41
CDH3-205ENST00000566808 G3V2T6 193 aa12.51□□□□□ -0.41
CDH3-205ENST00000566808 UBE2CO00762 179 aa12.51□□□□□ -0.41
CDH3-205ENST00000566808 RBMXL2O75526 392 aaKnown RBP12.51□□□□□ -0.41
CDH3-205ENST00000566808 BDKRB2P30411 391 aa12.51□□□□□ -0.41
CDH3-205ENST00000566808 TCTAP57738 103 aa12.51□□□□□ -0.41
CDH3-205ENST00000566808 FLOT2Q14254 428 aa12.51□□□□□ -0.41
CDH3-205ENST00000566808 HMGN3Q15651 99 aa12.51□□□□□ -0.41
CDH3-205ENST00000566808 HSP90B2PQ58FF3 399 aa12.51□□□□□ -0.41
CDH3-205ENST00000566808 C5orf24Q7Z6I8 188 aa12.51□□□□□ -0.41
CDH3-205ENST00000566808 FAM223AQ8IWN6 122 aa12.51□□□□□ -0.41
CDH3-205ENST00000566808 GPR148Q8TDV2 347 aa12.51□□□□□ -0.41
CDH3-205ENST00000566808 ABRACLQ9P1F3 81 aa12.51□□□□□ -0.41
CDH3-205ENST00000566808 ZNF230Q9UIE0 474 aaPredicted RBP12.51□□□□□ -0.41
CDH3-205ENST00000566808 DNAH17Q9UFH2 4485 aa12.51□□□□□ -0.41
CDH3-205ENST00000566808 UBE2QL1A1L167 161 aa12.5□□□□□ -0.41
CDH3-205ENST00000566808 TUSC2O75896 110 aa12.5□□□□□ -0.41
CDH3-205ENST00000566808 EDN2P20800 178 aa12.5□□□□□ -0.41
CDH3-205ENST00000566808 FUT3P21217 361 aa12.5□□□□□ -0.41
CDH3-205ENST00000566808 RPS16P62249 146 aaKnown RBP12.5□□□□□ -0.41
CDH3-205ENST00000566808 ZNF45Q02386 682 aa12.5□□□□□ -0.41
CDH3-205ENST00000566808 PDPNQ86YL7 162 aa12.5□□□□□ -0.41
CDH3-205ENST00000566808 ADAD2Q8NCV1 583 aaKnown RBP12.5□□□□□ -0.41
CDH3-205ENST00000566808 IL1F10Q8WWZ1 152 aa12.5□□□□□ -0.41
CDH3-205ENST00000566808 ZNF184Q99676 751 aaPredicted RBP12.5□□□□□ -0.41
CDH3-205ENST00000566808 KRTAP4-5Q9BYR2 181 aa12.5□□□□□ -0.41
CDH3-205ENST00000566808 ISG20L2Q9H9L3 353 aaKnown RBP12.5□□□□□ -0.41
CDH3-205ENST00000566808 PKD1P98161 4303 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.49□□□□□ -0.41
CDH3-205ENST00000566808 E9PI62 339 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 LGALS9O00182 355 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 ITGB1BP1O14713 200 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 APOA2P02652 100 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 CALB2P22676 271 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 POLR2IP36954 125 aaKnown RBP12.49□□□□□ -0.41
CDH3-205ENST00000566808 CAPGP40121 348 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 PJVKQ0ZLH3 352 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 RIPK1Q13546 671 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 FAM209BQ5JX69 171 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 ZNF57Q68EA5 555 aaPredicted RBP12.49□□□□□ -0.41
CDH3-205ENST00000566808 ZDHHC13Q8IUH4 622 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 KCNG3Q8TAE7 436 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 RNF183Q96D59 192 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 ABHD14BQ96IU4 210 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 NSL1Q96IY1 281 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 MFFQ9GZY8 342 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 AKIP1Q9NQ31 210 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 IMPAD1Q9NX62 359 aa12.49□□□□□ -0.41
CDH3-205ENST00000566808 PDCD6O75340 191 aa12.48□□□□□ -0.41
CDH3-205ENST00000566808 OR9G9P0C7N8 305 aa12.48□□□□□ -0.41
CDH3-205ENST00000566808 MAP2K4P45985 399 aa12.48□□□□□ -0.41
CDH3-205ENST00000566808 RHOGP84095 191 aa12.48□□□□□ -0.41
CDH3-205ENST00000566808 LHFPL3Q86UP9 236 aa12.48□□□□□ -0.41
CDH3-205ENST00000566808 TRUB1Q8WWH5 349 aaKnown RBP12.48□□□□□ -0.41
CDH3-205ENST00000566808 OR14A2Q96R54 314 aa12.48□□□□□ -0.41
CDH3-205ENST00000566808 PHB2Q99623 299 aa12.48□□□□□ -0.41
CDH3-205ENST00000566808 THTPAQ9BU02 230 aa12.48□□□□□ -0.41
CDH3-205ENST00000566808 SELENOIQ9C0D9 397 aa12.48□□□□□ -0.41
CDH3-205ENST00000566808 EXOGQ9Y2C4 368 aaKnown RBP12.48□□□□□ -0.41
CDH3-205ENST00000566808 KIR2DL5BA0A0G2JN68 375 aa12.47□□□□□ -0.41
CDH3-205ENST00000566808 KIR2DL5BA0A0G2JPC4 375 aa12.47□□□□□ -0.41
CDH3-205ENST00000566808 MGMTP16455 207 aa12.47□□□□□ -0.41
CDH3-205ENST00000566808 CBLN1P23435 193 aa12.47□□□□□ -0.41
CDH3-205ENST00000566808 GBX2P52951 348 aaPredicted RBP12.47□□□□□ -0.41
CDH3-205ENST00000566808 RBMS2Q15434 407 aaKnown RBP12.47□□□□□ -0.41
CDH3-205ENST00000566808 TM4SF20Q53R12 229 aa12.47□□□□□ -0.41
CDH3-205ENST00000566808 SIGIRRQ6IA17 410 aa12.47□□□□□ -0.41
CDH3-205ENST00000566808 KIR2DL5AQ8N109 375 aa12.47□□□□□ -0.41
CDH3-205ENST00000566808 ZNF383Q8NA42 475 aa12.47□□□□□ -0.41
CDH3-205ENST00000566808 DRAXINQ8NBI3 349 aaPredicted RBP12.47□□□□□ -0.41
CDH3-205ENST00000566808 KIR2DL5BQ8NHK3 375 aa12.47□□□□□ -0.41
CDH3-205ENST00000566808 CACNG8Q8WXS5 425 aa12.47□□□□□ -0.41
CDH3-205ENST00000566808 LGALS12Q96DT0 336 aa12.47□□□□□ -0.41
CDH3-205ENST00000566808 CYYR1Q96J86 154 aa12.47□□□□□ -0.41
CDH3-205ENST00000566808 Q96M66 194 aa12.47□□□□□ -0.41
CDH3-205ENST00000566808 AGMATQ9BSE5 352 aa12.47□□□□□ -0.41
CDH3-205ENST00000566808 SNTNA6NMZ2 147 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 SCAF4O95104 1147 aaKnown RBP12.46□□□□□ -0.41
CDH3-205ENST00000566808 IFNA4P05014 189 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 APELAP0DMC3 54 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 ATP5G2Q06055 141 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 ATP6AP1Q15904 470 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms