RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 APOBEC3DQ96AK3 386 aaPredicted RBP11.23□□□□□ -0.61
VPS4A-204ENST00000566354 WFIKKN1Q96NZ8 548 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 HIST1H2AAQ96QV6 131 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 HIST1H2BNQ99877 126 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 HIST1H2BMQ99879 126 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 C12orf49Q9H741 205 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 CISD1Q9NZ45 108 aaKnown RBP11.23□□□□□ -0.61
VPS4A-204ENST00000566354 TLN1Q9Y490 2541 aaKnown RBP11.22□□□□□ -0.61
VPS4A-204ENST00000566354 IGKV3D-15A0A087WSY6 115 aa11.22□□□□□ -0.61
VPS4A-204ENST00000566354 C5orf49A4QMS7 147 aa11.22□□□□□ -0.61
VPS4A-204ENST00000566354 WNT2P09544 360 aa11.22□□□□□ -0.61
VPS4A-204ENST00000566354 HNF1AP20823 631 aa11.22□□□□□ -0.61
VPS4A-204ENST00000566354 CLDN18P56856 261 aa11.22□□□□□ -0.61
VPS4A-204ENST00000566354 KRTCAP3Q53RY4 240 aa11.22□□□□□ -0.61
VPS4A-204ENST00000566354 ZNF324BQ6AW86 544 aaPredicted RBP11.22□□□□□ -0.61
VPS4A-204ENST00000566354 ZDHHC11Q9H8X9 412 aa11.22□□□□□ -0.61
VPS4A-204ENST00000566354 GNG13Q9P2W3 67 aa11.22□□□□□ -0.61
VPS4A-204ENST00000566354 ELOA3CA0A087WX78 387 aaPredicted RBP11.21□□□□□ -0.61
VPS4A-204ENST00000566354 A0A0G2JRQ6 117 aa11.21□□□□□ -0.61
VPS4A-204ENST00000566354 LRP5LA4QPB2 252 aa11.21□□□□□ -0.61
VPS4A-204ENST00000566354 TGOLN2O43493 480 aa11.21□□□□□ -0.61
VPS4A-204ENST00000566354 RAB11AP62491 216 aa11.21□□□□□ -0.61
VPS4A-204ENST00000566354 C3AR1Q16581 482 aa11.21□□□□□ -0.61
VPS4A-204ENST00000566354 TBR1Q16650 682 aa11.21□□□□□ -0.61
VPS4A-204ENST00000566354 FAM90A2PQ658T7 463 aa11.21□□□□□ -0.61
VPS4A-204ENST00000566354 ZNF295-AS1Q8N0V1 137 aa11.21□□□□□ -0.61
VPS4A-204ENST00000566354 ABHD17AQ96GS6 310 aa11.21□□□□□ -0.61
VPS4A-204ENST00000566354 PSMG3Q9BT73 122 aaPredicted RBP11.21□□□□□ -0.61
VPS4A-204ENST00000566354 RPRMQ9NS64 109 aa11.21□□□□□ -0.61
VPS4A-204ENST00000566354 CRIM1Q9NZV1 1036 aa11.21□□□□□ -0.61
VPS4A-204ENST00000566354 H3BP45 60 aa11.21□□□□□ -0.62
VPS4A-204ENST00000566354 PPP1R2P9O14990 202 aa11.21□□□□□ -0.62
VPS4A-204ENST00000566354 GGCTO75223 188 aaKnown RBP11.21□□□□□ -0.62
VPS4A-204ENST00000566354 TRGC2P03986 189 aa11.21□□□□□ -0.62
VPS4A-204ENST00000566354 BCL2P10415 239 aa11.21□□□□□ -0.62
VPS4A-204ENST00000566354 APOBEC3AP31941 199 aaPredicted RBP11.21□□□□□ -0.62
VPS4A-204ENST00000566354 ACSF3Q4G176 576 aaPredicted RBP11.21□□□□□ -0.62
VPS4A-204ENST00000566354 C20orf204Q6ZNR8 217 aa11.21□□□□□ -0.62
VPS4A-204ENST00000566354 RBMXL3Q8N7X1 1067 aaKnown RBP11.21□□□□□ -0.62
VPS4A-204ENST00000566354 OR51H1Q8NH63 302 aa11.21□□□□□ -0.62
VPS4A-204ENST00000566354 MBD3L1Q8WWY6 194 aa11.21□□□□□ -0.62
VPS4A-204ENST00000566354 LSM10Q969L4 123 aaKnown RBP11.21□□□□□ -0.62
VPS4A-204ENST00000566354 RHOVQ96L33 236 aa11.21□□□□□ -0.62
VPS4A-204ENST00000566354 TAAR6Q96RI8 345 aa11.21□□□□□ -0.62
VPS4A-204ENST00000566354 ERRFI1Q9UJM3 462 aaPredicted RBP11.21□□□□□ -0.62
VPS4A-204ENST00000566354 A0A096LPE4 126 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 TRGV5A0A0B4J1U4 118 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 A0A1W2PPZ6 126 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 CLDN34H7C241 214 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 ZNHIT1O43257 154 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 SYNGR1O43759 233 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 PSG2P11465 335 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 CCL2P13500 99 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 RND2P52198 227 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 TMPRSS3P57727 454 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 NKX6-1P78426 367 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-204ENST00000566354 ZNF787Q6DD87 383 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 ZNF880Q6PDB4 577 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 C1orf87Q8N0U7 546 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 OR5R1Q8NH85 324 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 MRGPRDQ8TDS7 321 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 FAM210BQ96KR6 192 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 P2RX4Q99571 388 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 SPRR3Q9UBC9 169 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 SYNGR2O43760 224 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 SS18L1O75177 396 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-204ENST00000566354 CYB5R3P00387 301 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-204ENST00000566354 HLA-HP01893 362 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 RBX1P62877 108 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 SERF2P84101 59 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 TMEM267Q0VDI3 215 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-204ENST00000566354 Q6ZS92 163 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 CABLES2Q9BTV7 478 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 PRRG4Q9BZD6 226 aa11.2□□□□□ -0.62
VPS4A-204ENST00000566354 TPRP12270 2363 aaKnown RBP11.19□□□□□ -0.62
VPS4A-204ENST00000566354 TRAV24A0A0B4J272 114 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 ZFP92A6NM28 416 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 HS3ST1O14792 307 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 ATXN7O15265 892 aaPredicted RBP11.19□□□□□ -0.62
VPS4A-204ENST00000566354 C1orf185Q5T7R7 199 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 Q6ZRM9 215 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 ZNF573Q86YE8 665 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 OR10V1Q8NGI7 309 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 OR5P3Q8WZ94 311 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 RDH5Q92781 318 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 RSG1Q9BU20 258 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 CD300LBA8K4G0 201 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 NPIPB11E5RHQ5 1161 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 DEGS1O15121 323 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 HBG1P69891 147 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 HBG2P69892 147 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 C9orf135Q5VTT2 229 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 OR2T2Q6IF00 324 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 FAM58AQ8N1B3 248 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 HIST3H2BBQ8N257 126 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 OR10D4PQ8NGN7 298 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 ZNF665Q9H7R5 613 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 SDF2L1Q9HCN8 221 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 PSENENQ9NZ42 101 aa11.19□□□□□ -0.62
VPS4A-204ENST00000566354 CACNG5Q9UF02 275 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms