RNA–Protein interactions for RNA: ENST00000565580.3

TCF4-229, Transcript of transcription factor 4, human

TSL 4

Gene TCF4, Length 530 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-229	ENST00000565580	LSM4	Q9Y4Z0	139 aa	Known RBP	4.95	□□□□□ -1.62
TCF4-229	ENST00000565580	TRAV41	A0A0B4J266	112 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	FOXI3	A8MTJ6	420 aa	Predicted RBP	4.94	□□□□□ -1.62
TCF4-229	ENST00000565580		I3L521	148 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	FCN1	O00602	326 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	SLC22A1	O15245	554 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	NBR2	O15453	112 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	SOCS1	O15524	211 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	SOX15	O60248	233 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	RGS11	O94810	467 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	NDUFA3	O95167	84 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	UCHL1	P09936	223 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	CT45A6	P0DMU7	189 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	CT45A5	P0DMU8	189 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	CT45A7	P0DMV0	189 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	OR5H8	P0DN80	308 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	CD37	P11049	281 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	SRM	P19623	302 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	RPS25	P62851	125 aa	Known RBP	4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	IRF3	Q14653	427 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	P2RY14	Q15391	338 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	SPHAR	Q15513	63 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	ECSCR	Q19T08	205 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	ZNF260	Q3ZCT1	412 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	HSD17B12	Q53GQ0	312 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	C19orf54	Q5BKX5	351 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	C9orf66	Q5T8R8	295 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	LIPK	Q5VXJ0	399 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	GLT8D1	Q68CQ7	371 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	GLDN	Q6ZMI3	551 aa	Predicted RBP	4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	TMEM91	Q6ZNR0	172 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	MS4A15	Q8N5U1	240 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	ZNF491	Q8N8L2	437 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	MINDY2	Q8NBR6	621 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	NPB	Q8NG41	125 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	OR2AK2	Q8NG84	335 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	OR11H1	Q8NG94	326 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	OR1N2	Q8NGR9	330 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	KCNG3	Q8TAE7	436 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	SETD6	Q8TBK2	473 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	CASTOR1	Q8WTX7	329 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	PHYHIP	Q92561	330 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	TMEM203	Q969S6	136 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	GALM	Q96C23	342 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	ABHD14B	Q96IU4	210 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	UBE2E2	Q96LR5	201 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	ALX4	Q9H161	411 aa	Predicted RBP	4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	LPAR5	Q9H1C0	372 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	TMPRSS5	Q9H3S3	457 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	FBXL15	Q9H469	300 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	CHMP1A	Q9HD42	196 aa	Predicted RBP	4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	OR1A1	Q9P1Q5	309 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	NKX1-2	Q9UD57	310 aa	Predicted RBP	4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	AK3	Q9UIJ7	227 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	GAB2	Q9UQC2	676 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580	VSIG4	Q9Y279	399 aa		4.94	□□□□□ -1.62
TCF4-229	ENST00000565580		A0A1W2PN81	502 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580		H0YJW9	148 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	RRH	O14718	337 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	RAMP3	O60896	148 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	PROP1	O75360	226 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	EGR2	P11161	476 aa	Predicted RBP	4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	CHRNA7	P36544	502 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	RAB9A	P51151	201 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	AQP4	P55087	323 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	TMEM50B	P56557	158 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	CLDN12	P56749	244 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	LINC00205	P59089	165 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	CX3CL1	P78423	397 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	HLA-DRB3	P79483	266 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	RUNX1	Q01196	453 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	ZNF616	Q08AN1	781 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	PLA2G7	Q13093	441 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	MED22	Q15528	200 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	LIN54	Q6MZP7	749 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	FAM71F2	Q6NXP2	309 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	TMEM65	Q6PI78	240 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	OR6M1	Q8NGM8	313 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	NRG4	Q8WWG1	115 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	DCUN1D4	Q92564	292 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	UFD1	Q92890	307 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	WWC2-AS2	Q96NR7	200 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	ASCL2	Q99929	193 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	CHCHD6	Q9BRQ6	235 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	AGMAT	Q9BSE5	352 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	FAM103A1	Q9BTL3	118 aa	Known RBP	4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	C11orf54	Q9H0W9	315 aa	Predicted RBP	4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	4.93	□□□□□ -1.62	1e-6	■■□□□ 14.2
TCF4-229	ENST00000565580	PLEKHJ1	Q9NW61	149 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	PIPOX	Q9P0Z9	390 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	ABRACL	Q9P1F3	81 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	KIAA1456	Q9P272	454 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	ZMAT5	Q9UDW3	170 aa	Known RBP	4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	STEAP1	Q9UHE8	339 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	SLC23A1	Q9UHI7	598 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	AK6	Q9Y3D8	172 aa	Known RBP	4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	LRRC42	Q9Y546	428 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	A3GALT2	U3KPV4	340 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	DNAH7	Q8WXX0	4024 aa		4.93	□□□□□ -1.62
TCF4-229	ENST00000565580	SORL1	Q92673	2214 aa		4.93	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms