RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 HIST1H2BDP58876 126 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 HIST1H2BCP62807 126 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 MEF2DQ14814 521 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 HIST2H2BEQ16778 126 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.18□□□□□ -1.74
VPS35-205ENST00000563984 FAM27D1Q5T7N8 215 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 OR2T2Q6IF00 324 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 APOOLQ6UXV4 268 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 PQLC2Q6ZP29 291 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 ZNF429Q86V71 674 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 ZNF695Q8IW36 515 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 TEX29Q8N6K0 151 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 ZNF433Q8N7K0 673 aaPredicted RBP4.18□□□□□ -1.74
VPS35-205ENST00000563984 COX18Q8N8Q8 333 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 OR2M3Q8NG83 312 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 OR5D16Q8NGK9 328 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 OR1J4Q8NGS1 313 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 OR2T27Q8NH04 317 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 NEIL3Q8TAT5 605 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 FNDC9Q8TBE3 224 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 HIST1H2BHQ93079 126 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 SLC25A46Q96AG3 418 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 PLEKHB2Q96CS7 222 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 ACY3Q96HD9 319 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 GMPPAQ96IJ6 420 aaPredicted RBP4.18□□□□□ -1.74
VPS35-205ENST00000563984 SCGB3A2Q96PL1 93 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 OR4C12Q96R67 309 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 HSD17B10Q99714 261 aaKnown RBP4.18□□□□□ -1.74
VPS35-205ENST00000563984 HIST1H2BNQ99877 126 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 HIST1H2BMQ99879 126 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 IL25Q9H293 177 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 SLC25A19Q9HC21 320 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 ACKR4Q9NPB9 350 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 TMEM30AQ9NV96 361 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 OCIAD1Q9NX40 245 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 CCDC167Q9P0B6 97 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 PILRAQ9UKJ1 303 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 PKIGQ9Y2B9 76 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 NSG2Q9Y328 171 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 IER3IP1Q9Y5U9 82 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 ENPP4Q9Y6X5 453 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 LOXHD1Q8IVV2 1947 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 DISP2A7MBM2 1401 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 UNC13BO14795 1591 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 CCDC88AQ3V6T2 1871 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 KIF13BQ9NQT8 1826 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 TRAV5A0A0B4J249 113 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 A0A0G2JND7 137 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 A0A1B0GW64 132 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 C7orf71A4D174 169 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 GGT3PA6NGU5 568 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 ZNF705FA8MVS1 300 aaPredicted RBP4.17□□□□□ -1.74
VPS35-205ENST00000563984 H0YJW9 148 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.17□□□□□ -1.74
VPS35-205ENST00000563984 NDUFB4O95168 129 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 ZNF682O95780 498 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 OXTP01178 125 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 MMP7P09237 267 aaPredicted RBP4.17□□□□□ -1.74
VPS35-205ENST00000563984 ZNF705DP0CH99 300 aaPredicted RBP4.17□□□□□ -1.74
VPS35-205ENST00000563984 ZNF705BP0CI00 300 aaPredicted RBP4.17□□□□□ -1.74
VPS35-205ENST00000563984 ZNF728P0DKX0 622 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 GNB3P16520 340 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 CD58P19256 250 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 EDNRAP25101 427 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 MMDQ15546 238 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 MRPL54Q6P161 138 aaKnown RBP4.17□□□□□ -1.74
VPS35-205ENST00000563984 UNQ5815/PRO19632Q6UWF5 114 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 SBSNQ6UWP8 590 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 STAC2Q6ZMT1 411 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 TEX43Q6ZNM6 134 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 Q71RC1 249 aaPredicted RBP4.17□□□□□ -1.74
VPS35-205ENST00000563984 NR2C2APQ86WQ0 139 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 TGIF2LYQ8IUE0 185 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 C9orf40Q8IXQ3 194 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 C1orf158Q8N1D5 194 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 TMEM99Q8N816 258 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 TCEANCQ8N8B7 351 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 OR5AK2Q8NH90 309 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 JOSD2Q8TAC2 188 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 CNIH3Q8TBE1 160 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 SEC22AQ96IW7 307 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 KIR2DL4Q99706 377 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 FAM173AQ9BQD7 235 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 AGMATQ9BSE5 352 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 RPP25Q9BUL9 199 aaKnown RBP4.17□□□□□ -1.74
VPS35-205ENST00000563984 GGTLC1Q9BX51 225 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 HES7Q9BYE0 225 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 WDR61Q9GZS3 305 aaKnown RBP4.17□□□□□ -1.74
VPS35-205ENST00000563984 RNASE7Q9H1E1 156 aaKnown RBP4.17□□□□□ -1.74
VPS35-205ENST00000563984 ZNF226Q9NYT6 803 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 EHFQ9NZC4 300 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 PAM16Q9Y3D7 125 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 YTHDF2Q9Y5A9 579 aaKnown RBP4.17□□□□□ -1.74
VPS35-205ENST00000563984 ARAP2Q8WZ64 1704 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 SBF1O95248 1867 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 LRRC9Q6ZRR7 1453 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 RAPGEF6Q8TEU7 1601 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 PPLO60437 1756 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 NCKAP5O14513 1909 aa4.17□□□□□ -1.74
VPS35-205ENST00000563984 ABCC1P33527 1531 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms