RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 RAB1CQ92928 201 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 RBPMSQ93062 196 aaKnown RBP7.39□□□□□ -1.23
VPS39-207ENST00000563692 OR10C1Q96KK4 312 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 GAL3ST2Q9H3Q3 398 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 LIN7CQ9NUP9 197 aaKnown RBP7.39□□□□□ -1.23
VPS39-207ENST00000563692 RNF150Q9ULK6 438 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 IGHV4-30-2A0A087WSY4 118 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 TRAV14DV4A0A0A6YYC5 116 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 A0A1W2PPH5 198 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 KANTRA0A1W2PQU2 76 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 TNFRSF13BO14836 293 aaPredicted RBP7.38□□□□□ -1.23
VPS39-207ENST00000563692 GPR37O15354 613 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 IFNA7P01567 189 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 CGB3P0DN86 165 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 CGB7P0DN87 165 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 ZNF16P17020 682 aaPredicted RBP7.38□□□□□ -1.23
VPS39-207ENST00000563692 CXCL2P19875 107 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 VDAC1P21796 283 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 COL8A2P25067 703 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 PPP1CCP36873 323 aaKnown RBP7.38□□□□□ -1.23
VPS39-207ENST00000563692 GPR12P47775 334 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 PDLIM4P50479 330 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 S100A10P60903 97 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 RPL31P62899 125 aaKnown RBP7.38□□□□□ -1.23
VPS39-207ENST00000563692 IL15RAQ13261 267 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 LTC4SQ16873 150 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 ZNF66Q6ZN08 573 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 DRAM1Q8N682 238 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 ZNF525Q8N782 197 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 SLC35G3Q8N808 338 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 DCUN1D4Q92564 292 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 TIMD4Q96H15 378 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 HSD17B10Q99714 261 aaKnown RBP7.38□□□□□ -1.23
VPS39-207ENST00000563692 PIMREGQ9BSJ6 248 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 DCTN5Q9BTE1 182 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 ARL6Q9H0F7 186 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 OR2D2Q9H210 308 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 LINC00574Q9H8X3 128 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 YAE1D1Q9NRH1 226 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 FAM212BQ9NTI7 297 aaPredicted RBP7.38□□□□□ -1.23
VPS39-207ENST00000563692 DCAF16Q9NXF7 216 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 IDI2-AS1Q9NZ38 188 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 TNFSF18Q9UNG2 199 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 GAB2Q9UQC2 676 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 LINC00312Q9Y6C7 94 aa7.38□□□□□ -1.23
VPS39-207ENST00000563692 FN1P02751 2386 aaKnown RBP7.37□□□□□ -1.23
VPS39-207ENST00000563692 NF1P21359 2839 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 IGHV3-43A0A0B4J1X8 118 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 MPTX1A8MV57 137 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 NDUFS8O00217 210 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 ST8SIA3O43173 380 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 CD5LO43866 347 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 RP2O75695 350 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 F12P00748 615 aaPredicted RBP7.37□□□□□ -1.23
VPS39-207ENST00000563692 IGLV2-14P01704 120 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 IGHV3-43DP0DP04 118 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 SLC25A6P12236 298 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 LYL1P12980 280 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 PVALBP20472 110 aaPredicted RBP7.37□□□□□ -1.23
VPS39-207ENST00000563692 USF1P22415 310 aaPredicted RBP7.37□□□□□ -1.23
VPS39-207ENST00000563692 AP2S1P53680 142 aaPredicted RBP7.37□□□□□ -1.23
VPS39-207ENST00000563692 RAB32Q13637 225 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 ZNF345Q14585 488 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 GNMTQ14749 295 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 C17orf58Q2M2W7 97 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 TEX261Q6UWH6 196 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 KCNRGQ8N5I3 272 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 OR51H1Q8NH63 302 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 RNASE11Q8TAA1 199 aaKnown RBP7.37□□□□□ -1.23
VPS39-207ENST00000563692 CD300LFQ8TDQ1 290 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 LSM10Q969L4 123 aaKnown RBP7.37□□□□□ -1.23
VPS39-207ENST00000563692 RRNAD1Q96FB5 475 aaKnown RBP7.37□□□□□ -1.23
VPS39-207ENST00000563692 ABHD14BQ96IU4 210 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 RNF126Q9BV68 326 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 ZC4H2Q9NQZ6 224 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 GFOD1Q9NXC2 390 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 MBD2Q9UBB5 411 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 PSG11Q9UQ72 335 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 U3KQ87 197 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 VPS13CQ709C8 3753 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 JMJD1CQ15652 2540 aa7.37□□□□□ -1.23
VPS39-207ENST00000563692 NIPBLQ6KC79 2804 aaeCLIP7.36□□□□□ -1.23
VPS39-207ENST00000563692 TRBV23-1A0A0A0MS06 115 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 A0A1B0GU03 582 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 E5RGE8 158 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 DVL1O14640 695 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 CRLF1O75462 422 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 SCGB1D2O95969 90 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 SELLP14151 372 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 DAOP14920 347 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 NFYBP25208 207 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 TMEM33P57088 247 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 LOXL3P58215 753 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 RAB14P61106 215 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 LOXL1Q08397 574 aaPredicted RBP7.36□□□□□ -1.23
VPS39-207ENST00000563692 TMEM249Q2WGJ8 235 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 Q3ZCU0 254 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 TMEM200BQ69YZ2 307 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 LYPD2Q6UXB3 125 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 SLC51BQ86UW2 128 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms