RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 TMEM9BQ9NQ34 198 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 EHFQ9NZC4 300 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 KCNIP1Q9NZI2 227 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 IL36AQ9UHA7 158 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 MMP17Q9ULZ9 603 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 NTNG1Q9Y2I2 539 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 LSM5Q9Y4Y9 91 aaKnown RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 IER3IP1Q9Y5U9 82 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 SELENOKQ9Y6D0 94 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 ENPP4Q9Y6X5 453 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 RBBP6Q7Z6E9 1792 aaKnown RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 UBR2Q8IWV8 1755 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 FER1L6Q2WGJ9 1857 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 RREB1Q92766 1687 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 IGHV3OR16-10A0A075B7F0 116 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 IGHV2-26A0A0B4J1V2 119 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 IGKV3D-20A0A0C4DH25 116 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 A0A0U1RRA0 63 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 CENPVL3A0A0U1RRI6 287 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 A0A1B0GX51 115 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 OR51F1A6NGY5 319 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 EPM2AB3EWF7 344 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 TMEM262E9PQX1 116 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 F8W1H4 67 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 H3BMH7 237 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 H7BYZ3 331 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 SOCS3O14543 225 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 SIVA1O15304 175 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 NBR2O15453 112 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 CRXO43186 299 aaPredicted RBP2.77□□□□□ -1.97
VPS35-203ENST00000562420 SNAI2O43623 268 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 GNG7O60262 68 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 CLDN11O75508 207 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 CNMDO75829 334 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 DHRS3O75911 302 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 PTHP01270 115 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 HLA-DRB1P01911 266 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 H2BFMP0C1H6 154 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 IGLC1P0CG04 106 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 PGA3P0DJD8 388 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 CD59P13987 128 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 TCN2P20062 427 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 PPIBP23284 216 aaKnown RBP2.77□□□□□ -1.97
VPS35-203ENST00000562420 PRSS3P35030 304 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 CDKN2BP42772 138 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 GPR1P46091 355 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 OR3A4PP47883 348 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 MARCKSL1P49006 195 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 DAPP51397 102 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 CCL11P51671 97 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 HNRNPA3P51991 378 aaKnown RBP2.77□□□□□ -1.97
VPS35-203ENST00000562420 EFNB2P52799 333 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 SMIM11AP58511 58 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 SLC35B1P78383 322 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 EWSR1Q01844 656 aaKnown RBP eCLIP2.77□□□□□ -1.97
VPS35-203ENST00000562420 AKR1C1Q04828 323 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 SIGLEC14Q08ET2 396 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 TMEM267Q0VDI3 215 aaPredicted RBP2.77□□□□□ -1.97
VPS35-203ENST00000562420 ADIRFQ15847 76 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 ALKBH6Q3KRA9 238 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 ACSF3Q4G176 576 aaPredicted RBP2.77□□□□□ -1.97
VPS35-203ENST00000562420 DCST2Q5T1A1 773 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 WDR25Q64LD2 544 aaPredicted RBP2.77□□□□□ -1.97
VPS35-203ENST00000562420 DPPA3Q6W0C5 159 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 ASCL4Q6XD76 172 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 C19orf35Q6ZS72 473 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 CPEB2Q7Z5Q1 589 aaKnown RBP2.77□□□□□ -1.97
VPS35-203ENST00000562420 TSEN54Q7Z6J9 526 aaKnown RBP2.77□□□□□ -1.97
VPS35-203ENST00000562420 S100A7AQ86SG5 101 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 MOB3BQ86TA1 216 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 GKN2Q86XP6 184 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 C1orf174Q8IYL3 243 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 OR8I2Q8N0Y5 310 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 ZADH2Q8N4Q0 377 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 NUP37Q8NFH4 326 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 OR2Z1Q8NG97 314 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 OR4K17Q8NGC6 315 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 OR52R1Q8NGF1 315 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 OR4L1Q8NH43 312 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 OR52P1PQ8NH57 321 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 ZNRF2Q8NHG8 242 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 FAM110BQ8TC76 370 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 ACER1Q8TDN7 264 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 Q8WTZ3 238 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 PCNPQ8WW12 178 aaKnown RBP2.77□□□□□ -1.97
VPS35-203ENST00000562420 MBD3L1Q8WWY6 194 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 GEMIN6Q8WXD5 167 aaKnown RBP2.77□□□□□ -1.97
VPS35-203ENST00000562420 FRZBQ92765 325 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 TSACCQ96A04 125 aaPredicted RBP2.77□□□□□ -1.97
VPS35-203ENST00000562420 FAM46BQ96A09 425 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 C10orf35Q96D05 121 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 RBMXL1Q96E39 390 aaKnown RBP2.77□□□□□ -1.97
VPS35-203ENST00000562420 C18orf12Q96KH6 178 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 SPATA33Q96N06 139 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 TSSK2Q96PF2 358 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 TNFRSF13CQ96RJ3 184 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 GPER1Q99527 375 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 P2RX4Q99571 388 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 TBX5Q99593 518 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 NIPSNAP3BQ9BS92 247 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms