RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 SLC2A9Q9NRM0 540 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 GFOD1Q9NXC2 390 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 CELSR2Q9HCU4 2923 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 PPIAL4CA0A0B4J2A2 164 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 A0A1W2PPH5 198 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 C9orf170A2RU37 121 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 VWC2LB2RUY7 222 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 GPR31O00270 319 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 PPIAL4GP0DN37 164 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 VAMP1P23763 118 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 NFYBP25208 207 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 DLX6P56179 175 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 ERVFRD-1P60508 538 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 LMO4P61968 165 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 POLR2GP62487 172 aaKnown RBP eCLIP9.23□□□□□ -0.93
USP3-218ENST00000560202 HEPN1Q6WQI6 88 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 SGPP2Q8IWX5 399 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 LY6G5BQ8NDX9 201 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 CLDND2Q8NHS1 167 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 PCNPQ8WW12 178 aaKnown RBP9.23□□□□□ -0.93
USP3-218ENST00000560202 RTN4IP1Q8WWV3 396 aaPredicted RBP9.23□□□□□ -0.93
USP3-218ENST00000560202 EDARADDQ8WWZ3 215 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 ARL6Q9H0F7 186 aa9.23□□□□□ -0.93
USP3-218ENST00000560202 LOC105371242A0A075B767 164 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 TEX13DA0A0J9YY54 714 aaPredicted RBP9.22□□□□□ -0.93
USP3-218ENST00000560202 CRYM-AS1A6NIL9 109 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 C22orf46C9J442 243 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 SFT2D2O95562 160 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 IGLV2-14P01704 120 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 IGHV3-7P01780 117 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 DSCR9P59020 149 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 RND3P61587 244 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 SUPT4H1P63272 117 aaKnown RBP9.22□□□□□ -0.93
USP3-218ENST00000560202 ZNF345Q14585 488 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 LY6G6FQ5SQ64 297 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 UTF1Q5T230 341 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 CMTM1Q8IZ96 169 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 CCDC71LQ8N9Z2 235 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 OR2AK2Q8NG84 335 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 LEAP2Q969E1 77 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 AKR1E2Q96JD6 320 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 TCEAL7Q9BRU2 100 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 MS4A7Q9GZW8 240 aaPredicted RBP9.22□□□□□ -0.93
USP3-218ENST00000560202 BEX4Q9NWD9 120 aaPredicted RBP9.22□□□□□ -0.93
USP3-218ENST00000560202 RNF150Q9ULK6 438 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 KCNS2Q9ULS6 477 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 PSG11Q9UQ72 335 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 AKAP6Q13023 2319 aa9.22□□□□□ -0.93
USP3-218ENST00000560202 GCN1Q92616 2671 aaKnown RBP9.21□□□□□ -0.93
USP3-218ENST00000560202 C17orf98A8MV24 154 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 ITGB1BP1O14713 200 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 MPPED1O15442 326 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 ST8SIA5O15466 376 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 GATCO43716 136 aaKnown RBP9.21□□□□□ -0.93
USP3-218ENST00000560202 ATG12O94817 140 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 DUS4LO95620 317 aaKnown RBP9.21□□□□□ -0.93
USP3-218ENST00000560202 LIPFP07098 398 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 ZNF134P52741 427 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 SLC9A3R2Q15599 337 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 C11orf88Q6PI97 169 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 ALKAL2Q6UX46 152 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 C12orf45Q8N5I9 185 aaPredicted RBP9.21□□□□□ -0.93
USP3-218ENST00000560202 C11orf42Q8N5U0 333 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 ZNF645Q8N7E2 425 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 CASTOR1Q8WTX7 329 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 FAM216AQ8WUB2 273 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 MITD1Q8WV92 249 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 RAB39BQ96DA2 213 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 NARS2Q96I59 477 aaKnown RBP9.21□□□□□ -0.93
USP3-218ENST00000560202 AGMATQ9BSE5 352 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 CHIAQ9BZP6 476 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 OR2D2Q9H210 308 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 NAA60Q9H7X0 242 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 KCNIP3Q9Y2W7 256 aa9.21□□□□□ -0.93
USP3-218ENST00000560202 KIAA2026Q5HYC2 2103 aa9.21□□□□□ -0.94
USP3-218ENST00000560202 CENPEQ02224 2701 aa9.21□□□□□ -0.94
USP3-218ENST00000560202 IGHV4-30-2A0A087WSY4 118 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 KIAA1324LA8MWY0 1029 aaPredicted RBP9.2□□□□□ -0.94
USP3-218ENST00000560202 PGLYRP1O75594 196 aaPredicted RBP9.2□□□□□ -0.94
USP3-218ENST00000560202 IFNA2P01563 188 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 IGHV1-8P0DP01 117 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 ZFP36P26651 326 aaKnown RBP9.2□□□□□ -0.94
USP3-218ENST00000560202 S100GP29377 79 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 AKR1D1P51857 326 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 DEFA5Q01523 94 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 CLEC12BQ2HXU8 276 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 DEFB113Q30KQ7 82 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 CT45A1Q5HYN5 189 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 DHRS7BQ6IAN0 325 aaPredicted RBP9.2□□□□□ -0.94
USP3-218ENST00000560202 TBC1D26Q86UD7 250 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 DRAM1Q8N682 238 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 ZNF439Q8NDP4 499 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 DMBX1Q8NFW5 382 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 CT45A3Q8NHU0 189 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 ABHD14BQ96IU4 210 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 PHB2Q99623 299 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 IGHV4-61A0A0C4DH41 118 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 A0A1W2PPE3 182 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 SLC31A2O15432 143 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 ARPC5O15511 151 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms