RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 FAM90A9PA6NNJ1 464 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 TRDCB7Z8K6 153 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 OR2F2O95006 317 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 GAPDHP04406 335 aaKnown RBP7.49□□□□□ -1.21
LDLR-211ENST00000560173 LPLP06858 475 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 SCTP09683 121 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 SLC6A1P30531 599 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 KIR2DS4P43632 304 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 REG1BP48304 166 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 RFX2P48378 723 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 PROK1P58294 105 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 MRPS15P82914 257 aaKnown RBP7.49□□□□□ -1.21
LDLR-211ENST00000560173 C16orf82Q7Z2V1 217 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 THNSL2Q86YJ6 484 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 Q8N2B8 174 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 RTN4IP1Q8WWV3 396 aaPredicted RBP7.49□□□□□ -1.21
LDLR-211ENST00000560173 PARP12Q9H0J9 701 aaKnown RBP7.49□□□□□ -1.21
LDLR-211ENST00000560173 IFI27L2Q9H2X8 130 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 ZNF702PQ9H963 129 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 OR1A1Q9P1Q5 309 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 MTFP1Q9UDX5 166 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 ELF5Q9UKW6 265 aaPredicted RBP7.49□□□□□ -1.21
LDLR-211ENST00000560173 SIGLEC9Q9Y336 463 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 RNF114Q9Y508 228 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 NUBP2Q9Y5Y2 271 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 WNK1Q9H4A3 2382 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 VWFP04275 2813 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 TRAV18A0A075B6X5 111 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 LINC00854A0A1B0GVQ3 168 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 FABP7O15540 132 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 TXNL1O43396 289 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 LANCL1O43813 399 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 HNRNPCP07910 306 aaKnown RBP eCLIP7.48□□□□□ -1.21
LDLR-211ENST00000560173 SNRNP70P08621 437 aaKnown RBP7.48□□□□□ -1.21
LDLR-211ENST00000560173 GSTP1P09211 210 aaKnown RBP7.48□□□□□ -1.21
LDLR-211ENST00000560173 FAM106CPP0CH98 169 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 TBPP20226 339 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 DTYMKP23919 212 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 RCVRNP35243 200 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 CBX5P45973 191 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 RAB25P57735 213 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 DGCR2P98153 550 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 ARFRP1Q13795 201 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 KLF9Q13886 244 aaPredicted RBP7.48□□□□□ -1.21
LDLR-211ENST00000560173 KIR2DS1Q14954 304 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 HERPUD1Q15011 391 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 PNLIPRP3Q17RR3 467 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 ZNF260Q3ZCT1 412 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 CDNFQ49AH0 187 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 SHISA2Q6UWI4 295 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 Q6ZS49 121 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 MOB3BQ86TA1 216 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 TGIF2LXQ8IUE1 241 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 ODF3L1Q8IXM7 274 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 IZUMO1Q8IYV9 350 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 LYG1Q8N1E2 194 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 OR2AK2Q8NG84 335 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 OR4A4PQ8NGN8 299 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 OR52I2Q8NH67 350 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 CAPSLQ8WWF8 208 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 MAFIPQ8WZ33 124 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 RBM14Q96PK6 669 aaKnown RBP7.48□□□□□ -1.21
LDLR-211ENST00000560173 MARVELD1Q9BSK0 173 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 SLC25A33Q9BSK2 321 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 CABLES2Q9BTV7 478 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 SLC23A1Q9UHI7 598 aa7.48□□□□□ -1.21
LDLR-211ENST00000560173 ZNF230Q9UIE0 474 aaPredicted RBP7.48□□□□□ -1.21
LDLR-211ENST00000560173 IGKV1D-8A0A087WSZ0 117 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 SAA2-SAA4A0A096LPE2 208 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 IGHV3-72A0A0B4J1Y9 119 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 ANKRD20A5PA0PJZ0 165 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 TMEM235A6NFC5 223 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 ITGB1BP1O14713 200 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 ST8SIA5O15466 376 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 HSPA12AO43301 675 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 SSX5O60225 188 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 PRAF2O60831 178 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 DIRAS3O95661 229 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 IGKV1D-33P01593 117 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 IGKV1-33P01594 117 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 SAA2P0DJI9 122 aaPredicted RBP7.47□□□□□ -1.21
LDLR-211ENST00000560173 ZBTB25P24278 435 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 HLA-DMAP28067 261 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 OR3A3P47888 321 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 TAS2R19P59542 299 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 KRTAP10-3P60369 221 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 BLCAPP62952 87 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 EBI3Q14213 229 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 SRSF7Q16629 238 aaKnown RBP eCLIP7.47□□□□□ -1.21
LDLR-211ENST00000560173 C11orf88Q6PI97 169 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 ZNF833PQ6ZTB9 187 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 AKAP14Q86UN6 197 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 CADM3Q8N126 398 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 DTX3Q8N9I9 347 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 OR2T6Q8NHC8 308 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 NUDCD2Q8WVJ2 157 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 AKR1E2Q96JD6 320 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 MRPL20Q9BYC9 149 aaKnown RBP7.47□□□□□ -1.21
LDLR-211ENST00000560173 PRSS22Q9GZN4 317 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 AUNIPQ9H7T9 357 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms