RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 TCF23Q7RTU1 214 aa12.17□□□□□ -0.46
VPS33B-205ENST00000556096 FAM210AQ96ND0 272 aa12.17□□□□□ -0.46
VPS33B-205ENST00000556096 GFOD1Q9NXC2 390 aa12.17□□□□□ -0.46
VPS33B-205ENST00000556096 SLC25A10Q9UBX3 287 aaPredicted RBP12.17□□□□□ -0.46
VPS33B-205ENST00000556096 RCL1Q9Y2P8 373 aaKnown RBP12.17□□□□□ -0.46
VPS33B-205ENST00000556096 AUP1Q9Y679 476 aa12.17□□□□□ -0.46
VPS33B-205ENST00000556096 LINC00312Q9Y6C7 94 aa12.17□□□□□ -0.46
VPS33B-205ENST00000556096 SPTAN1Q13813 2472 aaKnown RBP12.17□□□□□ -0.46
VPS33B-205ENST00000556096 HRNRQ86YZ3 2850 aaPredicted RBP12.16□□□□□ -0.46
VPS33B-205ENST00000556096 A0A0G2JRQ6 117 aa12.16□□□□□ -0.46
VPS33B-205ENST00000556096 GPR137BO60478 399 aa12.16□□□□□ -0.46
VPS33B-205ENST00000556096 TPT1P13693 172 aaKnown RBP12.16□□□□□ -0.46
VPS33B-205ENST00000556096 LPAR6P43657 344 aa12.16□□□□□ -0.46
VPS33B-205ENST00000556096 RAB7AP51149 207 aa12.16□□□□□ -0.46
VPS33B-205ENST00000556096 RPL30P62888 115 aaKnown RBP12.16□□□□□ -0.46
VPS33B-205ENST00000556096 HFEQ30201 348 aa12.16□□□□□ -0.46
VPS33B-205ENST00000556096 OR10A7Q8NGE5 316 aa12.16□□□□□ -0.46
VPS33B-205ENST00000556096 ZC4H2Q9NQZ6 224 aa12.16□□□□□ -0.46
VPS33B-205ENST00000556096 IDI2-AS1Q9NZ38 188 aa12.16□□□□□ -0.46
VPS33B-205ENST00000556096 ATG12O94817 140 aa12.15□□□□□ -0.46
VPS33B-205ENST00000556096 IGKV1-5P01602 117 aa12.15□□□□□ -0.46
VPS33B-205ENST00000556096 NDUFB7P17568 137 aa12.15□□□□□ -0.46
VPS33B-205ENST00000556096 PVALBP20472 110 aaPredicted RBP12.15□□□□□ -0.46
VPS33B-205ENST00000556096 GPR12P47775 334 aa12.15□□□□□ -0.46
VPS33B-205ENST00000556096 CXorf66Q5JRM2 361 aaPredicted RBP12.15□□□□□ -0.46
VPS33B-205ENST00000556096 BAP18Q8IXM2 172 aa12.15□□□□□ -0.46
VPS33B-205ENST00000556096 SLC25A32Q9H2D1 315 aa12.15□□□□□ -0.46
VPS33B-205ENST00000556096 LPAR3Q9UBY5 353 aa12.15□□□□□ -0.46
VPS33B-205ENST00000556096 USP9YO00507 2555 aaPredicted RBP12.15□□□□□ -0.46
VPS33B-205ENST00000556096 ARFGEF3Q5TH69 2177 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 NDUFB3O43676 98 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 NMBP08949 121 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 OMGP23515 440 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 ZNF134P52741 427 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 EIF5AP63241 154 aaKnown RBP12.14□□□□□ -0.47
VPS33B-205ENST00000556096 Q3ZCU0 254 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 LRRC10Q5BKY1 277 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 FGFRL1Q8N441 504 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 RNASE11Q8TAA1 199 aaKnown RBP12.14□□□□□ -0.47
VPS33B-205ENST00000556096 TCTEX1D2Q8WW35 142 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 PSMG3-AS1Q96PY0 264 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 CBLN4Q9NTU7 201 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 DSCAML1Q8TD84 2053 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 NBPF19A0A087WUL8 3843 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 PROP1O75360 226 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 GAPDHP04406 335 aaKnown RBP12.14□□□□□ -0.47
VPS33B-205ENST00000556096 AKR1C2P52895 323 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 TMEM33P57088 247 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 BRWD1-AS2P59051 145 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 POLR2GP62487 172 aaKnown RBP eCLIP12.14□□□□□ -0.47
VPS33B-205ENST00000556096 RPL31P62899 125 aaKnown RBP12.14□□□□□ -0.47
VPS33B-205ENST00000556096 LYPD2Q6UXB3 125 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 SPAG16Q8N0X2 631 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.14□□□□□ -0.47
VPS33B-205ENST00000556096 CD300LFQ8TDQ1 290 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 IFI27L2Q9H2X8 130 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 GAL3ST2Q9H3Q3 398 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 MED9Q9NWA0 146 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 COA4Q9NYJ1 87 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 RPUSD1Q9UJJ7 312 aaKnown RBP12.14□□□□□ -0.47
VPS33B-205ENST00000556096 LAMP3Q9UQV4 416 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 MMP24Q9Y5R2 645 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 ROS1P08922 2347 aa12.14□□□□□ -0.47
VPS33B-205ENST00000556096 C17orf98A8MV24 154 aa12.13□□□□□ -0.47
VPS33B-205ENST00000556096 KIAA1324LA8MWY0 1029 aaPredicted RBP12.13□□□□□ -0.47
VPS33B-205ENST00000556096 FCN3O75636 299 aa12.13□□□□□ -0.47
VPS33B-205ENST00000556096 IGFBP2P18065 325 aa12.13□□□□□ -0.47
VPS33B-205ENST00000556096 DUTP33316 252 aaKnown RBP12.13□□□□□ -0.47
VPS33B-205ENST00000556096 CT45A1Q5HYN5 189 aa12.13□□□□□ -0.47
VPS33B-205ENST00000556096 C11orf71Q6IPW1 123 aa12.13□□□□□ -0.47
VPS33B-205ENST00000556096 BTNL3Q6UXE8 466 aa12.13□□□□□ -0.47
VPS33B-205ENST00000556096 Q6ZRM9 215 aa12.13□□□□□ -0.47
VPS33B-205ENST00000556096 ZNF439Q8NDP4 499 aa12.13□□□□□ -0.47
VPS33B-205ENST00000556096 CT45A3Q8NHU0 189 aa12.13□□□□□ -0.47
VPS33B-205ENST00000556096 PCNPQ8WW12 178 aaKnown RBP12.13□□□□□ -0.47
VPS33B-205ENST00000556096 ABHD14AQ9BUJ0 271 aa12.13□□□□□ -0.47
VPS33B-205ENST00000556096 RAB1BQ9H0U4 201 aa12.13□□□□□ -0.47
VPS33B-205ENST00000556096 KLF2Q9Y5W3 355 aaPredicted RBP12.13□□□□□ -0.47
VPS33B-205ENST00000556096 LINC00473A8K010 186 aa12.12□□□□□ -0.47
VPS33B-205ENST00000556096 LEUTXA8MZ59 168 aa12.12□□□□□ -0.47
VPS33B-205ENST00000556096 RAMP3O60896 148 aa12.12□□□□□ -0.47
VPS33B-205ENST00000556096 JTBO76095 146 aa12.12□□□□□ -0.47
VPS33B-205ENST00000556096 P0C879 139 aa12.12□□□□□ -0.47
VPS33B-205ENST00000556096 EPHA1P21709 976 aa12.12□□□□□ -0.47
VPS33B-205ENST00000556096 COL8A2P25067 703 aa12.12□□□□□ -0.47
VPS33B-205ENST00000556096 VAMP2P63027 116 aa12.12□□□□□ -0.47
VPS33B-205ENST00000556096 SP5Q6BEB4 398 aaPredicted RBP12.12□□□□□ -0.47
VPS33B-205ENST00000556096 PDZD9Q8IXQ8 264 aa12.12□□□□□ -0.47
VPS33B-205ENST00000556096 OR2C3Q8N628 320 aa12.12□□□□□ -0.47
VPS33B-205ENST00000556096 C19orf12Q9NSK7 152 aa12.12□□□□□ -0.47
VPS33B-205ENST00000556096 CTSZQ9UBR2 303 aa12.12□□□□□ -0.47
VPS33B-205ENST00000556096 CACNG5Q9UF02 275 aa12.12□□□□□ -0.47
VPS33B-205ENST00000556096 FBXL17Q9UF56 701 aa12.12□□□□□ -0.47
VPS33B-205ENST00000556096 ASH1LQ9NR48 2969 aaKnown RBP12.12□□□□□ -0.47
VPS33B-205ENST00000556096 LRBAP50851 2863 aa12.12□□□□□ -0.47
VPS33B-205ENST00000556096 WRBO00258 174 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 SSSCA1O60232 199 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 RRASP10301 218 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 SLC25A31Q9H0C2 315 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 MAGT1Q9H0U3 335 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms