RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 OR4A8P0C604 315 aa9.25□□□□□ -0.93
SHMT2-216ENST00000554975 CA6P23280 308 aa9.25□□□□□ -0.93
SHMT2-216ENST00000554975 ZNF146Q15072 292 aa9.25□□□□□ -0.93
SHMT2-216ENST00000554975 HMGN3Q15651 99 aa9.25□□□□□ -0.93
SHMT2-216ENST00000554975 H1FOOQ8IZA3 346 aaPredicted RBP9.25□□□□□ -0.93
SHMT2-216ENST00000554975 GAPTQ8N292 157 aa9.25□□□□□ -0.93
SHMT2-216ENST00000554975 ZBTB34Q8NCN2 500 aa9.25□□□□□ -0.93
SHMT2-216ENST00000554975 OR8G5Q8NG78 346 aa9.25□□□□□ -0.93
SHMT2-216ENST00000554975 OR1J1Q8NGS3 322 aa9.25□□□□□ -0.93
SHMT2-216ENST00000554975 TSNAXQ99598 290 aaKnown RBP9.25□□□□□ -0.93
SHMT2-216ENST00000554975 NRIP2Q9BQI9 281 aa9.25□□□□□ -0.93
SHMT2-216ENST00000554975 ARV1Q9H2C2 271 aa9.25□□□□□ -0.93
SHMT2-216ENST00000554975 KCNIP1Q9NZI2 227 aa9.25□□□□□ -0.93
SHMT2-216ENST00000554975 TAAR3PQ9P1P4 343 aa9.25□□□□□ -0.93
SHMT2-216ENST00000554975 RCL1Q9Y2P8 373 aaKnown RBP9.25□□□□□ -0.93
SHMT2-216ENST00000554975 CARHSP1Q9Y2V2 147 aaKnown RBP9.25□□□□□ -0.93
SHMT2-216ENST00000554975 TRAV24A0A0B4J272 114 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 TMEM30CPA0ZSE6 113 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 TRIM77I1YAP6 450 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 HSPA12AO43301 675 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 SCAF4O95104 1147 aaKnown RBP9.24□□□□□ -0.93
SHMT2-216ENST00000554975 SNAPINO95295 136 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 KITLGP21583 273 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 GNRHRP30968 328 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 DVL1P1P54792 670 aaPredicted RBP9.24□□□□□ -0.93
SHMT2-216ENST00000554975 UCP2P55851 309 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 TMEM33P57088 247 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 HILS1P60008 231 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 ERVK11-1P61568 191 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 TUSC1Q2TAM9 212 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 SMIM21Q3B7S5 101 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 ZNF718Q3SXZ3 478 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 IGSF11Q5DX21 431 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 PXDC1Q5TGL8 231 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 RPL7L1Q6DKI1 246 aaKnown RBP9.24□□□□□ -0.93
SHMT2-216ENST00000554975 ZNF497Q6ZNH5 498 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 LYZL2Q7Z4W2 148 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 TCTEX1D1Q8N7M0 179 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 OR10V1Q8NGI7 309 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 RNASE11Q8TAA1 199 aaKnown RBP9.24□□□□□ -0.93
SHMT2-216ENST00000554975 SLC25A40Q8TBP6 338 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 TP53RKQ96S44 253 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 GINS3Q9BRX5 216 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 ZNF747Q9BV97 191 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 SEC11CQ9BY50 192 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 ESM1Q9NQ30 184 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 ZNF581Q9P0T4 197 aa9.24□□□□□ -0.93
SHMT2-216ENST00000554975 A0A1B0GU03 582 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 TMEM218A2RU14 115 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 B9A039 149 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 UMAD1C9J7I0 102 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 LGALS8O00214 317 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 DFFBO76075 338 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 SERPINE2P07093 398 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 SCTP09683 121 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 F2RP25116 425 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 GCH1P30793 250 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 CAV2P51636 162 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 RPS23P62266 143 aaKnown RBP9.23□□□□□ -0.93
SHMT2-216ENST00000554975 HERPUD1Q15011 391 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 ADIPOQQ15848 244 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 SP6Q3SY56 376 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 NMSQ5H8A3 153 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 Q6P435 159 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 TREML4Q6UXN2 200 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 ZNF818PQ6ZRF7 136 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 C1orf229Q6ZS94 237 aaPredicted RBP9.23□□□□□ -0.93
SHMT2-216ENST00000554975 STX12Q86Y82 276 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 OR2C3Q8N628 320 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 SCCPDHQ8NBX0 429 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 NUP37Q8NFH4 326 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 BPIFCQ8NFQ6 507 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 OR11L1Q8NGX0 322 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 LHFPL5Q8TAF8 219 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 RDH5Q92781 318 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 LSM10Q969L4 123 aaKnown RBP9.23□□□□□ -0.93
SHMT2-216ENST00000554975 NKX6-2Q9C056 277 aaPredicted RBP9.23□□□□□ -0.93
SHMT2-216ENST00000554975 OR2J1Q9GZK6 312 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 OR51B6Q9H340 312 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 RAB9BQ9NP90 201 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 DYNLRB1Q9NP97 96 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 MBNL3Q9NUK0 354 aaKnown RBP9.23□□□□□ -0.93
SHMT2-216ENST00000554975 PURGQ9UJV8 347 aaKnown RBP9.23□□□□□ -0.93
SHMT2-216ENST00000554975 TRAPPC2LQ9UL33 140 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 KPTNQ9Y664 436 aa9.23□□□□□ -0.93
SHMT2-216ENST00000554975 KMT2CQ8NEZ4 4911 aaKnown RBP9.23□□□□□ -0.93
SHMT2-216ENST00000554975 BTBD17A6NE02 478 aa9.22□□□□□ -0.93
SHMT2-216ENST00000554975 LYNX1G3V0Z9 82 aa9.22□□□□□ -0.93
SHMT2-216ENST00000554975 IFNL4K9M1U5 179 aa9.22□□□□□ -0.93
SHMT2-216ENST00000554975 SLC33A1O00400 549 aaPredicted RBP9.22□□□□□ -0.93
SHMT2-216ENST00000554975 HSPB6O14558 160 aa9.22□□□□□ -0.93
SHMT2-216ENST00000554975 TIMM8AO60220 97 aaPredicted RBP9.22□□□□□ -0.93
SHMT2-216ENST00000554975 HAND1O96004 215 aa9.22□□□□□ -0.93
SHMT2-216ENST00000554975 LYNX1P0DP58 116 aa9.22□□□□□ -0.93
SHMT2-216ENST00000554975 DEFA5Q01523 94 aa9.22□□□□□ -0.93
SHMT2-216ENST00000554975 EWSR1Q01844 656 aaKnown RBP eCLIP9.22□□□□□ -0.93
SHMT2-216ENST00000554975 ZNF154Q13106 437 aa9.22□□□□□ -0.93
SHMT2-216ENST00000554975 CATR1Q13166 79 aa9.22□□□□□ -0.93
SHMT2-216ENST00000554975 SPATA46Q5T0L3 261 aa9.22□□□□□ -0.93
SHMT2-216ENST00000554975 BRICD5Q6PL45 260 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms