RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 MTCH1Q9NZJ7 389 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 PPP1R3CQ9UQK1 317 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 CHCHD2Q9Y6H1 151 aaPredicted RBP4.11□□□□□ -1.75
LIMA1-214ENST00000552783 ACACAQ13085 2346 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 PKDREJQ9NTG1 2253 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 ZNF816-ZNF321PA0A0X1KG74 233 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 GJE1A6NN92 205 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 SYNGR2O43760 224 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 GGCTO75223 188 aaKnown RBP4.11□□□□□ -1.75
LIMA1-214ENST00000552783 ADMP35318 185 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 CYB561P49447 251 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 UBE2G2P60604 165 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 PLP2Q04941 152 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 TFF3Q07654 80 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 ZNF585BQ52M93 769 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 TPTE2P1Q5T6R2 138 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 FAM27BQ5VT28 67 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 TOMM20LQ6UXN7 152 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 C17orf82Q86X59 251 aaPredicted RBP4.11□□□□□ -1.75
LIMA1-214ENST00000552783 CPEB3Q8NE35 698 aaKnown RBP4.11□□□□□ -1.75
LIMA1-214ENST00000552783 OR5D13Q8NGL4 314 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 OR1L1Q8NH94 360 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 OR1F12Q8NHA8 337 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 SNIP1Q8TAD8 396 aaKnown RBP4.11□□□□□ -1.75
LIMA1-214ENST00000552783 TAF15Q92804 592 aaKnown RBP eCLIP4.11□□□□□ -1.75
LIMA1-214ENST00000552783 ACY3Q96HD9 319 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 FOXB1Q99853 325 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 SPOCK3Q9BQ16 436 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 OR51I2Q9H344 312 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 MANBALQ9NQG1 85 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 SLC39A9Q9NUM3 307 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 ATP23Q9Y6H3 246 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 A0A0U1RQK1 487 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 ZNF320A2RRD8 509 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 H0Y980 276 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 SYNGR1O43759 233 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 DKK1O94907 266 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 VAMP5O95183 116 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 SYNGR4O95473 234 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 MPLP40238 635 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 ATP5G3P48201 142 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 COMPP49747 757 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-214ENST00000552783 DSCR4P56555 118 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-214ENST00000552783 ZXDAP98168 799 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 OR5I1Q13606 314 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 TMEM41BQ5BJD5 291 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 ZNF324BQ6AW86 544 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-214ENST00000552783 LHFPL2Q6ZUX7 228 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 ZNF573Q86YE8 665 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 TGIF2LYQ8IUE0 185 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 ADPRHL1Q8NDY3 354 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 OR10D3Q8NH80 312 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 DTD1Q8TEA8 209 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 OR5B12Q96R08 314 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 P2RX4Q99571 388 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 AGMATQ9BSE5 352 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 WNT5BQ9H1J7 359 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 PROK2Q9HC23 129 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 SPTAN1Q13813 2472 aaKnown RBP4.1□□□□□ -1.75
LIMA1-214ENST00000552783 A0A0G2JMM0 328 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 A0A1W2PPB8 328 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 A0A1W2PRS3 328 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 KIR3DP1A8MWS1 328 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 TGOLN2O43493 480 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 TCF21O43680 179 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 ZIC3O60481 467 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 CBR3O75828 277 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 RPLP1P05386 114 aaKnown RBP4.1□□□□□ -1.75
LIMA1-214ENST00000552783 RFPL3SP0C7P2 107 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 THBS3P49746 956 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 DUSP3P51452 185 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-214ENST00000552783 GNB1P62873 340 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 SRPXP78539 464 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 DCAF12Q5T6F0 453 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 TMEM164Q5U3C3 297 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 ASPHD1Q5U4P2 390 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 WDR5BQ86VZ2 330 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 CPT1CQ8TCG5 803 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 RNASE8Q8TDE3 154 aaKnown RBP4.1□□□□□ -1.75
LIMA1-214ENST00000552783 VN1R17PQ8TDU5 208 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 GPR35Q9HC97 309 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 TRAPPC1Q9Y5R8 145 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 KIAA1549Q9HCM3 1950 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 BDP1A6H8Y1 2624 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 IGLV3-32A0A0A0MS00 114 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 LOC102725191A0A1B0GVB3 256 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 ZNF503-AS2A6NEH8 195 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 OR6C6A6NF89 314 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 RAMP3O60896 148 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 SERPINE2P07093 398 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 IL6RP08887 468 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-214ENST00000552783 LIFP15018 202 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 CBLN1P23435 193 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 S100GP29377 79 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 GNG10P50151 68 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 FUT6P51993 359 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 FOXG1P55316 489 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-214ENST00000552783 MMDQ15546 238 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 TMEM144Q7Z5S9 345 aa4.1□□□□□ -1.75
LIMA1-214ENST00000552783 LINC01551Q86U37 167 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms