RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 LEAP2Q969E1 77 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 TMEM230Q96A57 120 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 C5orf30Q96GV9 206 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 ADTRPQ96IZ2 230 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 SLC5A7Q9GZV3 580 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 C20orf85Q9H1P6 137 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 OR2D2Q9H210 308 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 SLC2A9Q9NRM0 540 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 KCNS2Q9ULS6 477 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 SAA2-SAA4A0A096LPE2 208 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 LINC00854A0A1B0GVQ3 168 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 CRYM-AS1A6NIL9 109 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 CYSRT1A8MQ03 144 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 VGLL3A8MV65 326 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 NPFFO15130 113 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 MPPED1O15442 326 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 RBFOX2O43251 390 aaKnown RBP eCLIP7.75□□□□□ -1.17
LIMA1-211ENST00000552338 PRAF2O60831 178 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 GAPDHP04406 335 aaKnown RBP7.75□□□□□ -1.17
LIMA1-211ENST00000552338 SAA2P0DJI9 122 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-211ENST00000552338 CD99P14209 185 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 ZNF16P17020 682 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-211ENST00000552338 F2RP25116 425 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 GPR12P47775 334 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 TAS2R31P59538 309 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 FXYD4P59646 89 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 EBI3Q14213 229 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 TPTE2P1Q5T6R2 138 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 GPR157Q5UAW9 335 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 CENPSQ8N2Z9 138 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 CCDC71LQ8N9Z2 235 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 NANPQ8TBE9 248 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 ENKURQ8TC29 256 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 SECTM1Q8WVN6 248 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 RTN4IP1Q8WWV3 396 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-211ENST00000552338 LHX4Q969G2 390 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 ABHD14BQ96IU4 210 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 S1PR3Q99500 378 aa7.75□□□□□ -1.17
LIMA1-211ENST00000552338 RBM7Q9Y580 266 aaKnown RBP7.75□□□□□ -1.17
LIMA1-211ENST00000552338 A0A0B4J2A0 478 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 A0A1W2PPI3 338 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 PEX14O75381 377 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 ARG1P05089 322 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 H2AFB2P0C5Z0 115 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 CT45A6P0DMU7 189 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 CT45A5P0DMU8 189 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 CT45A7P0DMV0 189 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 RPA2P15927 270 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 EPHA1P21709 976 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 CD1BP29016 333 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 S100GP29377 79 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 MC5RP33032 325 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 THBS3P49746 956 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 GNG10P50151 68 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 DLX1P56177 255 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 PIGPP57054 158 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 BRWD1-AS2P59051 145 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 SUPT4H1P63272 117 aaKnown RBP7.74□□□□□ -1.17
LIMA1-211ENST00000552338 KLRD1Q13241 179 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 CCDC144NLQ6NUI1 221 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 THNSL2Q86YJ6 484 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 LYG1Q8N1E2 194 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 LRTM2Q8N967 370 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 OR10X1Q8NGY0 326 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 CD300LFQ8TDQ1 290 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 CFHR4Q92496 578 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 TOMM40LQ969M1 308 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 RNF5Q99942 180 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 NABP2Q9BQ15 211 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 NUDT15Q9NV35 164 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 SHPKQ9UHJ6 478 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 NUP50Q9UKX7 468 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 RNF150Q9ULK6 438 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 C14orf166Q9Y224 244 aaKnown RBP7.74□□□□□ -1.17
LIMA1-211ENST00000552338 NAV3Q8IVL0 2385 aa7.74□□□□□ -1.17
LIMA1-211ENST00000552338 ACANP16112 2415 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 FLNAP21333 2647 aaKnown RBP7.73□□□□□ -1.17
LIMA1-211ENST00000552338 TRAV40A0A0B4J280 105 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 PIGBOS1A0A0B4J2F0 54 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 IGHV1-3A0A0C4DH29 117 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 A0A1W2PPE3 182 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 C7orf66A4D0T2 115 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 LINC00473A8K010 186 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 RNF212BA8MTL3 300 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 A8MV72 311 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-211ENST00000552338 SNRPGP15A8MWD9 76 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 INMT-MINDY4F8WBC2 141 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 H0Y980 276 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 HSD17B6O14756 317 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 ARPC1BO15143 372 aaKnown RBP7.73□□□□□ -1.17
LIMA1-211ENST00000552338 SFT2D2O95562 160 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 IGHV3-7P01780 117 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 OR4E1P0C645 316 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 IGHV4-38-2P0DP08 117 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 VSIG10L2P0DP72 767 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 RRASP10301 218 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 PGAM2P15259 253 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 SPNP16150 400 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 COX7A1P24310 79 aa7.73□□□□□ -1.17
LIMA1-211ENST00000552338 UCP1P25874 307 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms