RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 SIRT4Q9Y6E7 314 aaPredicted RBP12.12□□□□□ -0.47
COLCA1-204ENST00000540738 PI4KAP42356 2102 aa12.12□□□□□ -0.47
COLCA1-204ENST00000540738 TRIM77I1YAP6 450 aa12.12□□□□□ -0.47
COLCA1-204ENST00000540738 M0QZK8 103 aa12.12□□□□□ -0.47
COLCA1-204ENST00000540738 SCTP09683 121 aa12.12□□□□□ -0.47
COLCA1-204ENST00000540738 ERVS71-1P61550 626 aa12.12□□□□□ -0.47
COLCA1-204ENST00000540738 Q0VFX4 171 aa12.12□□□□□ -0.47
COLCA1-204ENST00000540738 ZNRF1Q8ND25 227 aa12.12□□□□□ -0.47
COLCA1-204ENST00000540738 MBD3L4A6NDZ8 208 aaPredicted RBP12.12□□□□□ -0.47
COLCA1-204ENST00000540738 MBD3L3A6NE82 208 aaPredicted RBP12.12□□□□□ -0.47
COLCA1-204ENST00000540738 MBD3L5A6NJ08 208 aaPredicted RBP12.12□□□□□ -0.47
COLCA1-204ENST00000540738 HYPMO75409 117 aa12.12□□□□□ -0.47
COLCA1-204ENST00000540738 TMEM50BP56557 158 aa12.12□□□□□ -0.47
COLCA1-204ENST00000540738 MBD3L2Q8NHZ7 208 aaPredicted RBP12.12□□□□□ -0.47
COLCA1-204ENST00000540738 IZUMO4Q1ZYL8 232 aa12.12□□□□□ -0.47
COLCA1-204ENST00000540738 RPEL1Q2QD12 228 aa12.12□□□□□ -0.47
COLCA1-204ENST00000540738 IGSF11Q5DX21 431 aa12.12□□□□□ -0.47
COLCA1-204ENST00000540738 EEF1AKMT3Q96AZ1 226 aa12.12□□□□□ -0.47
COLCA1-204ENST00000540738 MRPL37Q9BZE1 423 aaKnown RBP12.12□□□□□ -0.47
COLCA1-204ENST00000540738 A0A0G2JLM5 398 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 ADAP1O75689 374 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 TCF15Q12870 199 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 FAM78BQ5VT40 261 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 H3F3CQ6NXT2 135 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 ZIC4Q8N9L1 334 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 TANC1Q9C0D5 1861 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 KLF4O43474 513 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 GNG4P50150 75 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 RPL30P62888 115 aaKnown RBP12.11□□□□□ -0.47
COLCA1-204ENST00000540738 V9GYS6 101 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 COL6A6A6NMZ7 2263 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 CDRT15L2A8MXV6 281 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 OR52M1Q8NGK5 317 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 VWA8A3KMH1 1905 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 ARHGEF17Q96PE2 2063 aaPredicted RBP12.11□□□□□ -0.47
COLCA1-204ENST00000540738 TGOLN2O43493 480 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 ICMTO60725 284 aa12.11□□□□□ -0.47
COLCA1-204ENST00000540738 RELQ04864 619 aaPredicted RBP12.11□□□□□ -0.47
COLCA1-204ENST00000540738 ZNF385CQ66K41 422 aaPredicted RBP12.11□□□□□ -0.47
COLCA1-204ENST00000540738 LINC00312Q9Y6C7 94 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 IGHV1-18A0A0C4DH31 117 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 A0A1W2PP11 408 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 DYNLT3P51808 116 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 B2MP61769 119 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 LSM10Q969L4 123 aaKnown RBP12.1□□□□□ -0.47
COLCA1-204ENST00000540738 SDK2Q58EX2 2172 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 CELA3BP08861 270 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 RAB9AP51151 201 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 FXYD3Q14802 87 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 IGFL3Q6UXB1 125 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 TCTE3Q8IZS6 198 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 RBM14Q96PK6 669 aaKnown RBP12.1□□□□□ -0.47
COLCA1-204ENST00000540738 CEACAM18A8MTB9 384 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 SLC6A1P30531 599 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 FOXF2Q12947 444 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 SRSF6Q13247 344 aaKnown RBP12.1□□□□□ -0.47
COLCA1-204ENST00000540738 KHDC3LQ587J8 217 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 FAM216BQ8N7L0 139 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 WFIKKN1Q96NZ8 548 aa12.1□□□□□ -0.47
COLCA1-204ENST00000540738 QTRT1Q9BXR0 403 aaKnown RBP12.1□□□□□ -0.47
COLCA1-204ENST00000540738 MMP7P09237 267 aaPredicted RBP12.09□□□□□ -0.47
COLCA1-204ENST00000540738 GAMTQ14353 236 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 MYPOPQ86VE0 399 aaPredicted RBP12.09□□□□□ -0.47
COLCA1-204ENST00000540738 PCNPQ8WW12 178 aaKnown RBP12.09□□□□□ -0.47
COLCA1-204ENST00000540738 TCEAL7Q9BRU2 100 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 MRPL13Q9BYD1 178 aaKnown RBP12.09□□□□□ -0.47
COLCA1-204ENST00000540738 FBXL17Q9UF56 701 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 KCNK7Q9Y2U2 307 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 SLC35E3Q7Z769 313 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.09□□□□□ -0.47
COLCA1-204ENST00000540738 SSMEM1Q8WWF3 244 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 A0A0G2JNJ9 132 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 LRRC75AQ8NAA5 344 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 NPVFQ9HCQ7 196 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 Q9UFV3 132 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 THY1P04216 161 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 KIR2DL2P43627 348 aaPredicted RBP12.09□□□□□ -0.47
COLCA1-204ENST00000540738 ANKRD55Q3KP44 614 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 SP5Q6BEB4 398 aaPredicted RBP12.09□□□□□ -0.47
COLCA1-204ENST00000540738 LYZL2Q7Z4W2 148 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 LMX1BO60663 402 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 NPBWR2P48146 333 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 HSPE1P61604 102 aaKnown RBP12.09□□□□□ -0.47
COLCA1-204ENST00000540738 RAX2Q96IS3 184 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 MARVELD1Q9BSK0 173 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 PRSS22Q9GZN4 317 aa12.09□□□□□ -0.47
COLCA1-204ENST00000540738 ZNF705GA8MUZ8 300 aaPredicted RBP12.08□□□□□ -0.48
COLCA1-204ENST00000540738 NPIPB7O75200 414 aa12.08□□□□□ -0.48
COLCA1-204ENST00000540738 HTN1P15515 57 aa12.08□□□□□ -0.48
COLCA1-204ENST00000540738 RCC1P18754 421 aaPredicted RBP12.08□□□□□ -0.48
COLCA1-204ENST00000540738 TPPP2P59282 170 aa12.08□□□□□ -0.48
COLCA1-204ENST00000540738 IGHV3-21A0A0B4J1V1 117 aa12.08□□□□□ -0.48
COLCA1-204ENST00000540738 SLC25A16P16260 332 aa12.08□□□□□ -0.48
COLCA1-204ENST00000540738 ATP5IP56385 69 aaPredicted RBP12.08□□□□□ -0.48
COLCA1-204ENST00000540738 PSG5Q15238 335 aa12.08□□□□□ -0.48
COLCA1-204ENST00000540738 CLEC12BQ2HXU8 276 aa12.08□□□□□ -0.48
COLCA1-204ENST00000540738 TM4SF20Q53R12 229 aa12.08□□□□□ -0.48
COLCA1-204ENST00000540738 FAM166AQ6J272 317 aa12.08□□□□□ -0.48
COLCA1-204ENST00000540738 MANBALQ9NQG1 85 aa12.08□□□□□ -0.48
COLCA1-204ENST00000540738 PROB1E7EW31 1015 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms