RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	ZNF585B	Q52M93	769 aa		7.6	□□□□□ -1.19
YBX3-208	ENST00000540447	MIC13	Q5XKP0	118 aa		7.6	□□□□□ -1.19
YBX3-208	ENST00000540447	DNM1P46	Q6ZS02	220 aa		7.6	□□□□□ -1.19
YBX3-208	ENST00000540447	LYG1	Q8N1E2	194 aa		7.6	□□□□□ -1.19
YBX3-208	ENST00000540447	DECR2	Q9NUI1	292 aa		7.6	□□□□□ -1.19
YBX3-208	ENST00000540447	IL36G	Q9NZH8	169 aa		7.6	□□□□□ -1.19
YBX3-208	ENST00000540447	ONECUT1	Q9UBC0	465 aa		7.6	□□□□□ -1.19
YBX3-208	ENST00000540447	LRP6	O75581	1613 aa		7.6	□□□□□ -1.19
YBX3-208	ENST00000540447	TRGV10	A0A0A0MS01	117 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	KIR3DL2	P43630	455 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	LRRC61	Q9BV99	259 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	SPAG17	Q6Q759	2223 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	MS4A18	H0YCH9	400 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	PF4V1	P10720	104 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	CEACAM8	P31997	349 aa	Predicted RBP	7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	SLA	Q13239	276 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	LRRC75B	Q2VPJ9	315 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	MS4A18	Q3C1V0	323 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	RND1	Q92730	232 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	FAM117A	Q9C073	453 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	SEPSECS	Q9HD40	501 aa	Known RBP	7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	GAGE12H	A6NDE8	117 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447		K7EP13	123 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	TNFRSF6B	O95407	300 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	FST	P19883	344 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	CA7	P43166	264 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	CIRBP	Q14011	172 aa	Known RBP	7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	KIR3DS1	Q14943	382 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	PSG3	Q16557	428 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	SLC25A40	Q8TBP6	338 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	RNASEH2C	Q8TDP1	164 aa	Known RBP	7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	C12orf49	Q9H741	205 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	CHTOP	Q9Y3Y2	248 aa	Known RBP	7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	KCP	Q6ZWJ8	1503 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	IGHV3-15	A0A0B4J1V0	119 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447		B5MCH6	92 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	CD300E	Q496F6	205 aa	Predicted RBP	7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	C1orf43	Q9BWL3	253 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447	STRADB	Q9C0K7	418 aa		7.59	□□□□□ -1.19
YBX3-208	ENST00000540447		A0A0U1RQV5	110 aa		7.59	□□□□□ -1.2
YBX3-208	ENST00000540447		A0A1B0GTI1	187 aa		7.59	□□□□□ -1.2
YBX3-208	ENST00000540447	SHISA3	A0PJX4	238 aa		7.59	□□□□□ -1.2
YBX3-208	ENST00000540447	IZUMO1R	A6ND01	250 aa		7.59	□□□□□ -1.2
YBX3-208	ENST00000540447	RPL34	P49207	117 aa	Known RBP	7.59	□□□□□ -1.2
YBX3-208	ENST00000540447	TMEM187	Q14656	261 aa		7.59	□□□□□ -1.2
YBX3-208	ENST00000540447	ALKAL1	Q6UXT8	129 aa		7.59	□□□□□ -1.2
YBX3-208	ENST00000540447	SRSF12	Q8WXF0	261 aa	Known RBP	7.59	□□□□□ -1.2
YBX3-208	ENST00000540447	FOXC2	Q99958	501 aa		7.59	□□□□□ -1.2
YBX3-208	ENST00000540447	HCFC2	Q9Y5Z7	792 aa		7.59	□□□□□ -1.2
YBX3-208	ENST00000540447	SLC23A3	Q6PIS1	610 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	DMRTC2	Q8IXT2	367 aa	Predicted RBP	7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	TMEM256	Q8N2U0	113 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	ZBTB34	Q8NCN2	500 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	DEFB108B	Q8NET1	73 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	RNF126	Q9BV68	326 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	HSPE1	P61604	102 aa	Known RBP	7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	RPL31	P62899	125 aa	Known RBP	7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	NABP2	Q9BQ15	211 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	MBNL3	Q9NUK0	354 aa	Known RBP	7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	FRG2C	A6NGY1	282 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	NKX2-2	O95096	273 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	ADCYAP1	P18509	176 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	ZADH2	Q8N4Q0	377 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	FER1L6-AS2	Q96M78	137 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	KLK15	Q9H2R5	256 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	KLF12	Q9Y4X4	402 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	NUP214	P35658	2090 aa	Predicted RBP	7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	SH2D7	A6NKC9	451 aa	Predicted RBP	7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	RPL36A-HNRNPH2	H7BZ11	118 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	PIN1P1	O15428	100 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	FAM157B	P0CG42	384 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	ERVK11-1	P61568	191 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	RBPJ	Q06330	500 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	PIGY	Q3MUY2	71 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	ACTL10	Q5JWF8	245 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	UNQ9370/PRO34162	Q6UXP9	181 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	C10orf35	Q96D05	121 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	PGP	A6NDG6	321 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	SHISA7	A6NL88	538 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	NRG2	O14511	850 aa	Predicted RBP	7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	FOXF1	Q12946	379 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	DEFB118	Q96PH6	123 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	GNB1L	Q9BYB4	327 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	EPDR1	Q9UM22	224 aa		7.58	□□□□□ -1.2
YBX3-208	ENST00000540447	KIF13A	Q9H1H9	1805 aa		7.57	□□□□□ -1.2
YBX3-208	ENST00000540447	FAM231B	A6NCW3	169 aa		7.57	□□□□□ -1.2
YBX3-208	ENST00000540447	RAMP3	O60896	148 aa		7.57	□□□□□ -1.2
YBX3-208	ENST00000540447	ATP5L	O75964	103 aa		7.57	□□□□□ -1.2
YBX3-208	ENST00000540447	GCHFR	P30047	84 aa		7.57	□□□□□ -1.2
YBX3-208	ENST00000540447	RUNX3	Q13761	415 aa		7.57	□□□□□ -1.2
YBX3-208	ENST00000540447	DEFB133	Q30KQ1	61 aa		7.57	□□□□□ -1.2
YBX3-208	ENST00000540447	LY6G6F	Q5SQ64	297 aa		7.57	□□□□□ -1.2
YBX3-208	ENST00000540447	OR4A5	Q8NH83	315 aa		7.57	□□□□□ -1.2
YBX3-208	ENST00000540447	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	7.57	□□□□□ -1.2
YBX3-208	ENST00000540447	KLF2	Q9Y5W3	355 aa	Predicted RBP	7.57	□□□□□ -1.2
YBX3-208	ENST00000540447	SCN9A	Q15858	1988 aa		7.57	□□□□□ -1.2
YBX3-208	ENST00000540447	IFITM1	P13164	125 aa		7.57	□□□□□ -1.2
YBX3-208	ENST00000540447	KRTCAP3	Q53RY4	240 aa		7.57	□□□□□ -1.2
YBX3-208	ENST00000540447	LRRC10	Q5BKY1	277 aa		7.57	□□□□□ -1.2
YBX3-208	ENST00000540447	SFTPA2	Q8IWL1	248 aa		7.57	□□□□□ -1.2

Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms