RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 NRIP2Q9BQI9 281 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 TRBV23-1A0A0A0MS06 115 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 LINC00869P0C866 280 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 CCL3P10147 92 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 COL9A1P20849 921 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 RPS20P60866 119 aaKnown RBP9.24□□□□□ -0.93
CLIP1-209ENST00000537178 C2orf83Q53S99 150 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 CYB561D1Q8N8Q1 229 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 METTL26Q96S19 204 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 PLA2G2FQ9BZM2 168 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 IGHV3-21A0A0B4J1V1 117 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 LEPROTL1O95214 131 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 SFTPCP11686 197 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 GFRA1P56159 465 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 GCSAMQ8N6F7 178 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 ZNF714Q96N38 554 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 UCN2Q96RP3 112 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 RAXQ9Y2V3 346 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 CELA2BP08218 269 aaPredicted RBP9.24□□□□□ -0.93
CLIP1-209ENST00000537178 LIFP15018 202 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 REG1BP48304 166 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 MEF2BQ02080 365 aaPredicted RBP9.24□□□□□ -0.93
CLIP1-209ENST00000537178 TMEM252Q8N6L7 170 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 LAMA3Q16787 3333 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 WNT9BO14905 357 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 CCL4P13236 92 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 VAX1Q5SQQ9 334 aa9.24□□□□□ -0.93
CLIP1-209ENST00000537178 MRPL13Q9BYD1 178 aaKnown RBP9.24□□□□□ -0.93
CLIP1-209ENST00000537178 C7orf66A4D0T2 115 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 NDUFB4O95168 129 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 WDR25Q64LD2 544 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-209ENST00000537178 MDP1Q86V88 176 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 RHOVQ96L33 236 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 GPA33Q99795 319 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 UQCR10Q9UDW1 63 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 C17orf51A8MQB3 221 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 FAM106CPP0CH98 169 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 GUCA2BQ16661 112 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 PAPPA-AS1Q5QFB9 102 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 ABHD14BQ96IU4 210 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 HIST1H4GQ99525 98 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 MAP1LC3AQ9H492 121 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 WDR54Q9H977 334 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 IGHV3OR15-7A0A075B7D8 119 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 FCGR3AP08637 254 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 HOXD4P09016 255 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-209ENST00000537178 PF4V1P10720 104 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 COL10A1Q03692 680 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 TTC32Q5I0X7 151 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 FAM27BQ5VT28 67 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 LSM10Q969L4 123 aaKnown RBP9.23□□□□□ -0.93
CLIP1-209ENST00000537178 GALNT14Q96FL9 552 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 LPAR2Q9HBW0 351 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 H0Y980 276 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 HSPB1P04792 205 aaKnown RBP9.23□□□□□ -0.93
CLIP1-209ENST00000537178 LGALS3P17931 250 aaKnown RBP9.23□□□□□ -0.93
CLIP1-209ENST00000537178 SLC25A34Q6PIV7 304 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 FAM216AQ8WUB2 273 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 PLXNB3Q9ULL4 1909 aa9.23□□□□□ -0.93
CLIP1-209ENST00000537178 A0A0U1RQV5 110 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 UCNP55089 124 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 IRF3Q14653 427 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 DCAF10Q5QP82 559 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 LAMTOR1Q6IAA8 161 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 CLEC2AQ6UVW9 174 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 SHISA5Q8N114 240 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 TMEM45BQ96B21 275 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 TFPI2P48307 235 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 RPL8P62917 257 aaKnown RBP9.22□□□□□ -0.93
CLIP1-209ENST00000537178 RUNX1Q01196 453 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 P2RY6Q15077 328 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 OR4D11Q8NGI4 311 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 PHLDA3Q9Y5J5 127 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 A0A1W2PPE3 182 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 PGPA6NDG6 321 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 NUDT3O95989 172 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 CFDP00746 253 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-209ENST00000537178 CD1AP06126 327 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 HINT1P49773 126 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-209ENST00000537178 TMEM91Q6ZNR0 172 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 TCF24Q7RTU0 167 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 RGP1Q92546 391 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-209ENST00000537178 ZNF430Q9H8G1 570 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-209ENST00000537178 FRMPD3Q5JV73 1810 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 AHCTF1Q8WYP5 2266 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 CCL21O00585 134 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 S1PR2O95136 353 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 MPV17P39210 176 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 EMP1P54849 157 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 SPATA45Q537H7 98 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 TMEM183AQ8IXX5 376 aa9.22□□□□□ -0.93
CLIP1-209ENST00000537178 MRPS18AQ9NVS2 196 aaKnown RBP9.22□□□□□ -0.93
CLIP1-209ENST00000537178 RTTNQ86VV8 2226 aa9.21□□□□□ -0.93
CLIP1-209ENST00000537178 OR2A4O95047 310 aa9.21□□□□□ -0.93
CLIP1-209ENST00000537178 STAG3L3P0CL85 134 aa9.21□□□□□ -0.93
CLIP1-209ENST00000537178 FGF12P61328 243 aa9.21□□□□□ -0.93
CLIP1-209ENST00000537178 CCL8P80075 99 aa9.21□□□□□ -0.93
CLIP1-209ENST00000537178 CEACAM21Q3KPI0 293 aa9.21□□□□□ -0.93
CLIP1-209ENST00000537178 MTURNQ8N3F0 131 aa9.21□□□□□ -0.93
CLIP1-209ENST00000537178 RAX2Q96IS3 184 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms