RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 NKX2-1P43699 371 aaPredicted RBP15.59■□□□□ 0.09
VPS28-207ENST00000526977 P2RY1P47900 373 aa15.59■□□□□ 0.09
VPS28-207ENST00000526977 HTD2P86397 168 aa15.59■□□□□ 0.09
VPS28-207ENST00000526977 TMEM155Q4W5P6 130 aa15.59■□□□□ 0.09
VPS28-207ENST00000526977 LRRC10Q5BKY1 277 aa15.59■□□□□ 0.09
VPS28-207ENST00000526977 RPL7L1Q6DKI1 246 aaKnown RBP15.59■□□□□ 0.09
VPS28-207ENST00000526977 ZBTB34Q8NCN2 500 aa15.59■□□□□ 0.09
VPS28-207ENST00000526977 TENM4Q6N022 2769 aa15.59■□□□□ 0.09
VPS28-207ENST00000526977 A0A0G2JRQ6 117 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 A0A1B0GW55 424 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 DUX4L2P0CJ85 424 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 DUX4L3P0CJ86 424 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 DUX4L4P0CJ87 422 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 DUX4L5P0CJ88 424 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 DUX4L6P0CJ89 424 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 DUX4L7P0CJ90 424 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 EDDM3BP56851 147 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 ID3Q02535 119 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 GPR157Q5UAW9 335 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 THOC7Q6I9Y2 204 aaKnown RBP15.58■□□□□ 0.09
VPS28-207ENST00000526977 DUX4L9Q6RFH8 374 aaPredicted RBP15.58■□□□□ 0.09
VPS28-207ENST00000526977 LYPD2Q6UXB3 125 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 GPR146Q96CH1 333 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 BSCL2Q96G97 398 aaPredicted RBP15.58■□□□□ 0.09
VPS28-207ENST00000526977 OR2D2Q9H210 308 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 OR6C3Q9NZP0 311 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 DUX4Q9UBX2 424 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 PFDN2Q9UHV9 154 aa15.58■□□□□ 0.09
VPS28-207ENST00000526977 IGHV3-43A0A0B4J1X8 118 aa15.58■□□□□ 0.08
VPS28-207ENST00000526977 PIGBOS1A0A0B4J2F0 54 aa15.58■□□□□ 0.08
VPS28-207ENST00000526977 GPR137BO60478 399 aa15.58■□□□□ 0.08
VPS28-207ENST00000526977 IGHV3-43DP0DP04 118 aa15.58■□□□□ 0.08
VPS28-207ENST00000526977 ZNF16P17020 682 aaPredicted RBP15.58■□□□□ 0.08
VPS28-207ENST00000526977 POLR2GP62487 172 aaKnown RBP eCLIP15.58■□□□□ 0.08
VPS28-207ENST00000526977 EIF4EBP1Q13541 118 aaPredicted RBP15.58■□□□□ 0.08
VPS28-207ENST00000526977 CLEC9AQ6UXN8 241 aa15.58■□□□□ 0.08
VPS28-207ENST00000526977 C5orf30Q96GV9 206 aa15.58■□□□□ 0.08
VPS28-207ENST00000526977 BARX1Q9HBU1 254 aaPredicted RBP15.58■□□□□ 0.08
VPS28-207ENST00000526977 FBXL17Q9UF56 701 aa15.58■□□□□ 0.08
VPS28-207ENST00000526977 USF3Q68DE3 2245 aa15.58■□□□□ 0.08
VPS28-207ENST00000526977 HELZ2Q9BYK8 2649 aaKnown RBP15.57■□□□□ 0.08
VPS28-207ENST00000526977 TEX46H3BTG2 121 aa15.57■□□□□ 0.08
VPS28-207ENST00000526977 AVPI1Q5T686 147 aa15.57■□□□□ 0.08
VPS28-207ENST00000526977 LIN7CQ9NUP9 197 aaKnown RBP15.57■□□□□ 0.08
VPS28-207ENST00000526977 MIOXQ9UGB7 285 aa15.57■□□□□ 0.08
VPS28-207ENST00000526977 PITX3O75364 302 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 NDUFB7P17568 137 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 GPR6P46095 362 aaPredicted RBP15.56■□□□□ 0.08
VPS28-207ENST00000526977 ZNF787Q6DD87 383 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 TMED6Q8WW62 240 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 ABHD14BQ96IU4 210 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 A0A1B0GU03 582 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 RNF212BA8MTL3 300 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 DVL1O14640 695 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 IGHV4-39P01824 125 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 CGB3P0DN86 165 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 CGB7P0DN87 165 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 SLC25A6P12236 298 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 Q6ZRM9 215 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 LSM10Q969L4 123 aaKnown RBP15.56■□□□□ 0.08
VPS28-207ENST00000526977 AGMATQ9BSE5 352 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 SMIM3Q9BZL3 60 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 MAGT1Q9H0U3 335 aa15.56■□□□□ 0.08
VPS28-207ENST00000526977 GPR37O15354 613 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 IGKV1-5P01602 117 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 PAX1P15863 534 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 RPL30P62888 115 aaKnown RBP15.55■□□□□ 0.08
VPS28-207ENST00000526977 MEF2CQ06413 473 aaPredicted RBP15.55■□□□□ 0.08
VPS28-207ENST00000526977 MSMO1Q15800 293 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 LTC4SQ16873 150 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 IZUMO4Q1ZYL8 232 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 RAB9BQ9NP90 201 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 CTSZQ9UBR2 303 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 TRGV10A0A0A0MS01 117 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 hADV38S2A0JD32 116 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 A8MXK9 166 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 SHOXO15266 292 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 FGF16O43320 207 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 GAPDHP04406 335 aaKnown RBP15.55■□□□□ 0.08
VPS28-207ENST00000526977 FGF2P09038 288 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 EIF5AP63241 154 aaKnown RBP15.55■□□□□ 0.08
VPS28-207ENST00000526977 NHLH2Q02577 135 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 CCDC28AQ8IWP9 274 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 CORO2AQ92828 525 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 LPAR3Q9UBY5 353 aa15.55■□□□□ 0.08
VPS28-207ENST00000526977 KIAA1324LA8MWY0 1029 aaPredicted RBP15.54■□□□□ 0.08
VPS28-207ENST00000526977 JTBO76095 146 aa15.54■□□□□ 0.08
VPS28-207ENST00000526977 FAM157CP0CG43 387 aa15.54■□□□□ 0.08
VPS28-207ENST00000526977 EPHA1P21709 976 aa15.54■□□□□ 0.08
VPS28-207ENST00000526977 PDLIM4P50479 330 aa15.54■□□□□ 0.08
VPS28-207ENST00000526977 MORN2Q502X0 79 aa15.54■□□□□ 0.08
VPS28-207ENST00000526977 HSD17B13Q7Z5P4 300 aaPredicted RBP15.54■□□□□ 0.08
VPS28-207ENST00000526977 EIF4E3Q8N5X7 224 aaKnown RBP15.54■□□□□ 0.08
VPS28-207ENST00000526977 OR2C3Q8N628 320 aa15.54■□□□□ 0.08
VPS28-207ENST00000526977 WFDC1Q9HC57 220 aa15.54■□□□□ 0.08
VPS28-207ENST00000526977 PSG11Q9UQ72 335 aa15.54■□□□□ 0.08
VPS28-207ENST00000526977 AKAP6Q13023 2319 aa15.54■□□□□ 0.08
VPS28-207ENST00000526977 FAM24AA6NFZ4 105 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 F2RL2O00254 374 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 ST8SIA5O15466 376 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms