RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 C3orf56Q8N813 242 aa11.4□□□□□ -0.58
NUP54-216ENST00000514901 OR2T6Q8NHC8 308 aa11.4□□□□□ -0.58
NUP54-216ENST00000514901 LINC01006Q8NI28 216 aa11.4□□□□□ -0.58
NUP54-216ENST00000514901 MIXL1Q9H2W2 232 aa11.4□□□□□ -0.58
NUP54-216ENST00000514901 MMP27Q9H306 513 aa11.4□□□□□ -0.58
NUP54-216ENST00000514901 MOB4Q9Y3A3 225 aa11.4□□□□□ -0.58
NUP54-216ENST00000514901 A3GALT2U3KPV4 340 aa11.4□□□□□ -0.58
NUP54-216ENST00000514901 MEIS3P1A6NDR6 274 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 OR5H14A6NHG9 310 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 FGF16O43320 207 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 TUSC2O75896 110 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 CT45A6P0DMU7 189 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 CT45A5P0DMU8 189 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 CT45A7P0DMV0 189 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 OR5H8P0DN80 308 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 NFYAP23511 347 aaPredicted RBP11.39□□□□□ -0.59
NUP54-216ENST00000514901 MRPS10P82664 201 aaKnown RBP11.39□□□□□ -0.59
NUP54-216ENST00000514901 TAGLNQ01995 201 aaKnown RBP11.39□□□□□ -0.59
NUP54-216ENST00000514901 HNF4GQ14541 408 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 CDK10Q15131 360 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 LAX1Q8IWV1 398 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 Q8N6K4 173 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 GIMAP1Q8WWP7 306 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 TAF15Q92804 592 aaKnown RBP eCLIP11.39□□□□□ -0.59
NUP54-216ENST00000514901 SNAPC3Q92966 411 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 DIRAS2Q96HU8 199 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 OR2D2Q9H210 308 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 RNF114Q9Y508 228 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 TENM1Q9UKZ4 2725 aa11.39□□□□□ -0.59
NUP54-216ENST00000514901 ANK2Q01484 3957 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 ZNF736B4DX44 427 aaPredicted RBP11.38□□□□□ -0.59
NUP54-216ENST00000514901 FCGR2CP31995 323 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 RCVRNP35243 200 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 BLCAPP62952 87 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 PYHIN1Q6K0P9 492 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 DHRS11Q6UWP2 260 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 OR5AN1Q8NGI8 311 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 OR5H2Q8NGV7 314 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 FCAMRQ8WWV6 532 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 ADTRPQ96IZ2 230 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 ABHD1Q96SE0 405 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 RNF5Q99942 180 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 DCUN1D5Q9BTE7 237 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 ZNF747Q9BV97 191 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 ZNF702PQ9H963 129 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 SDHAF2Q9NX18 166 aa11.38□□□□□ -0.59
NUP54-216ENST00000514901 DPPA5A6NC42 116 aa11.37□□□□□ -0.59
NUP54-216ENST00000514901 NCBP2LA6PVI3 153 aaKnown RBP11.37□□□□□ -0.59
NUP54-216ENST00000514901 H0YJW9 148 aa11.37□□□□□ -0.59
NUP54-216ENST00000514901 M0R1X1 148 aa11.37□□□□□ -0.59
NUP54-216ENST00000514901 PROP1O75360 226 aa11.37□□□□□ -0.59
NUP54-216ENST00000514901 RBBP9O75884 186 aa11.37□□□□□ -0.59
NUP54-216ENST00000514901 ACTBP60709 375 aa11.37□□□□□ -0.59
NUP54-216ENST00000514901 SSBP1Q04837 148 aaKnown RBP11.37□□□□□ -0.59
NUP54-216ENST00000514901 DYRK1AQ13627 763 aa11.37□□□□□ -0.59
NUP54-216ENST00000514901 FBLN7Q53RD9 439 aa11.37□□□□□ -0.59
NUP54-216ENST00000514901 OVCH2Q7RTZ1 564 aa11.37□□□□□ -0.59
NUP54-216ENST00000514901 LYSMD2Q8IV50 215 aa11.37□□□□□ -0.59
NUP54-216ENST00000514901 ZNF645Q8N7E2 425 aa11.37□□□□□ -0.59
NUP54-216ENST00000514901 WASHC3Q9Y3C0 194 aa11.37□□□□□ -0.59
NUP54-216ENST00000514901 GABARAPH6UMI1 98 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 CTDSPLO15194 276 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 PPYP01298 95 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 APOA2P02652 100 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 AMY1AP04745 511 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 AMY2AP04746 511 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 FCER2P06734 321 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 TNFSF8P32971 234 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 S100A5P33763 92 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 THBS3P49746 956 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 PROK1P58294 105 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 IL18Q14116 193 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 MSMO1Q15800 293 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 ABCA11PQ4W5N1 156 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 ACTBL2Q562R1 376 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 ARSJQ5FYB0 599 aaPredicted RBP11.36□□□□□ -0.59
NUP54-216ENST00000514901 C5orf56Q8N8D9 126 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 ZBTB34Q8NCN2 500 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 PLSCR3Q9NRY6 295 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 EHFQ9NZC4 300 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 MTFP1Q9UDX5 166 aa11.36□□□□□ -0.59
NUP54-216ENST00000514901 ZNF107Q9UII5 783 aaPredicted RBP11.36□□□□□ -0.59
NUP54-216ENST00000514901 FABP12A6NFH5 140 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 H7C2Y5 167 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 PMP2P02689 132 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 RRASP10301 218 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 TBPP20226 339 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 AADACP22760 399 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 HLA-DMAP28067 261 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 HRH1P35367 487 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 VDAC2P45880 294 aaPredicted RBP11.35□□□□□ -0.59
NUP54-216ENST00000514901 RFX2P48378 723 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 HERV-K104P61576 105 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 CBX3Q13185 183 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 SHISA2Q6UWI4 295 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 FAM131AQ6UXB0 335 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 GLDNQ6ZMI3 551 aaPredicted RBP11.35□□□□□ -0.59
NUP54-216ENST00000514901 PDPNQ86YL7 162 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 ZNF383Q8NA42 475 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 DRAXINQ8NBI3 349 aaPredicted RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms