RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 PRO3102Q9H379 93 aa8.21□□□□□ -1.09
VCAN-210ENST00000513960 TAAR3PQ9P1P4 343 aa8.21□□□□□ -1.09
VCAN-210ENST00000513960 TIMM8BQ9Y5J9 83 aaPredicted RBP8.21□□□□□ -1.09
VCAN-210ENST00000513960 CRISP2P16562 243 aa8.21□□□□□ -1.1
VCAN-210ENST00000513960 RAB7AP51149 207 aa8.21□□□□□ -1.1
VCAN-210ENST00000513960 SLC35B1P78383 322 aa8.21□□□□□ -1.1
VCAN-210ENST00000513960 SRYQ05066 204 aa8.21□□□□□ -1.1
VCAN-210ENST00000513960 TDRG1Q3Y452 100 aa8.21□□□□□ -1.1
VCAN-210ENST00000513960 PPP1R32Q7Z5V6 425 aa8.21□□□□□ -1.1
VCAN-210ENST00000513960 SIGLECL1Q8N7X8 197 aa8.21□□□□□ -1.1
VCAN-210ENST00000513960 TAF15Q92804 592 aaKnown RBP eCLIP8.21□□□□□ -1.1
VCAN-210ENST00000513960 SIGLEC12Q96PQ1 595 aa8.21□□□□□ -1.1
VCAN-210ENST00000513960 P2RX4Q99571 388 aa8.21□□□□□ -1.1
VCAN-210ENST00000513960 OR2J1Q9GZK6 312 aa8.21□□□□□ -1.1
VCAN-210ENST00000513960 CLN8Q9UBY8 286 aa8.21□□□□□ -1.1
VCAN-210ENST00000513960 TRAPPC2LQ9UL33 140 aa8.21□□□□□ -1.1
VCAN-210ENST00000513960 RNF24Q9Y225 148 aa8.21□□□□□ -1.1
VCAN-210ENST00000513960 SYNGR3O43761 229 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 RFPL3SP0C7P2 107 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 C1QTNF9P0C862 333 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 CRYGSP22914 178 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 COTL1Q14019 142 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 C1orf194Q5T5A4 169 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 C6orf15Q6UXA7 325 aaPredicted RBP8.2□□□□□ -1.1
VCAN-210ENST00000513960 Q6ZN92 141 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 ATOH7Q8N100 152 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 ZNF525Q8N782 197 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 RNASEH2CQ8TDP1 164 aaKnown RBP8.2□□□□□ -1.1
VCAN-210ENST00000513960 ANAPC16Q96DE5 110 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 TMEM242Q9NWH2 141 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 COX5AP20674 150 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 CHRNB4P30926 498 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 HNRNPA3P51991 378 aaKnown RBP8.2□□□□□ -1.1
VCAN-210ENST00000513960 B3GALT5-AS1P59052 145 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 SUMO1P63165 101 aaKnown RBP8.2□□□□□ -1.1
VCAN-210ENST00000513960 CRIP3Q6Q6R5 217 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 CISD2Q8N5K1 135 aaKnown RBP8.2□□□□□ -1.1
VCAN-210ENST00000513960 ZCCHC14Q8WYQ9 949 aaKnown RBP8.2□□□□□ -1.1
VCAN-210ENST00000513960 TMEM56Q96MV1 263 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 LPAR2Q9HBW0 351 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 PRDM6Q9NQX0 595 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 LOXL2Q9Y4K0 774 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 TMEM56-RWDD3S4R434 201 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 ZDBF2Q9HCK1 2354 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 OR6C6A6NF89 314 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 FCN1O00602 326 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 NUPR1O60356 82 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 PAX9P55771 341 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 PSG4Q00888 419 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 LTC4SQ16873 150 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 SERTAD4Q9NUC0 356 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 ZNF391Q9UJN7 358 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 ZNF716A6NP11 495 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 SLC25A6P12236 298 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 UCP1P25874 307 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 SSPNQ14714 243 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 KIAA1644Q3SXP7 199 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 NMSQ5H8A3 153 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 Q6ZRM9 215 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 Q6ZSR3 168 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 RPP25LQ8N5L8 163 aaKnown RBP8.2□□□□□ -1.1
VCAN-210ENST00000513960 OR5AU1Q8NGC0 362 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 FAM234AQ9H0X4 552 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 OR1A1Q9P1Q5 309 aa8.2□□□□□ -1.1
VCAN-210ENST00000513960 IER3P46695 156 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 AMTP48728 403 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 HINT1P49773 126 aaPredicted RBP8.19□□□□□ -1.1
VCAN-210ENST00000513960 CLDN15P56746 228 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 NUFIP2Q7Z417 695 aaKnown RBP8.19□□□□□ -1.1
VCAN-210ENST00000513960 GGNQ86UU5 652 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 OR10P1Q8NGE3 313 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 OR5D13Q8NGL4 314 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 CT55Q8WUE5 264 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 R3HDM4Q96D70 268 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 PLPPR2Q96GM1 343 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 HS3ST6Q96QI5 342 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 STRADBQ9C0K7 418 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 WDR61Q9GZS3 305 aaKnown RBP8.19□□□□□ -1.1
VCAN-210ENST00000513960 RIMS4Q9H426 269 aaPredicted RBP8.19□□□□□ -1.1
VCAN-210ENST00000513960 BOKQ9UMX3 212 aaPredicted RBP8.19□□□□□ -1.1
VCAN-210ENST00000513960 TRAV38-1A0A0B4J264 116 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 MRPL33O75394 65 aaKnown RBP8.19□□□□□ -1.1
VCAN-210ENST00000513960 ADMP35318 185 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 MMDQ15546 238 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 MSMO1Q15800 293 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 IGFBP7Q16270 282 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 COL5A1-AS1Q5SY13 56 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 TGIF2LYQ8IUE0 185 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 DERL1Q9BUN8 251 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 OR2H1Q9GZK4 316 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 ZNF586Q9NXT0 402 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 H0Y980 276 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 S100A7P31151 101 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 NTF4P34130 210 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 ATP5G3P48201 142 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 CDC34P49427 236 aaPredicted RBP8.19□□□□□ -1.1
VCAN-210ENST00000513960 TCL1AP56279 114 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 SERF2P84101 59 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 Q0VFX4 171 aa8.19□□□□□ -1.1
VCAN-210ENST00000513960 DCAF10Q5QP82 559 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms