RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 SMIM12Q96EX1 92 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 KCNS1Q96KK3 526 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 ZPBPQ9BS86 351 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 KCNIP2Q9NS61 270 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 WASHC3Q9Y3C0 194 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 TMEM131Q92545 1883 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 TRAV30A0A087WSZ9 112 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 IGHV5-51A0A0C4DH38 117 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 DEGS1O15121 323 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 MT-CO2P00403 227 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 CD38P28907 300 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 TSPOP30536 169 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 GNB1P62873 340 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 TFF3Q07654 80 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 PMCHL1Q16048 86 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 OR1F12Q8NHA8 337 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 UBALD1Q8TB05 177 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 KLHDC7BQ96G42 594 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 QTRT1Q9BXR0 403 aaKnown RBP5.31□□□□□ -1.56
VPS13D-209ENST00000487188 IL36BQ9NZH7 164 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 CLN8Q9UBY8 286 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 OR2W1Q9Y3N9 320 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 ARL2-SNX15V9GYD0 113 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 DIDO1Q9BTC0 2240 aaKnown RBP5.31□□□□□ -1.56
VPS13D-209ENST00000487188 XIRP2A4UGR9 3374 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 TRAV38-1A0A0B4J264 116 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 F2Z2F3 143 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 S1PR2O95136 353 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 CA3P07451 260 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 MGST1P10620 155 aaKnown RBP5.31□□□□□ -1.56
VPS13D-209ENST00000487188 BCL3P20749 454 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 COL9A1P20849 921 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 SLC35B1P78383 322 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 PRAMEF20Q5VT98 475 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 CENPVQ7Z7K6 275 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-209ENST00000487188 LRFN3Q9BTN0 628 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 GNB4Q9HAV0 340 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 CDC42EP3Q9UKI2 254 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 UNC80Q8N2C7 3258 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 NCOA6Q14686 2063 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-209ENST00000487188 ADAMTS9Q9P2N4 1935 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 IGHV2OR16-5A0A0B4J2B6 119 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 M0R1X1 148 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 CIDEAO60543 219 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 MT-ND6P03923 174 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 GPX1P07203 203 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 SRIP30626 198 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 YPEL3P61236 119 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-209ENST00000487188 RAC1P63000 192 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 OCIAD2Q56VL3 154 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 KIAA0895LQ68EN5 471 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 SP5Q6BEB4 398 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-209ENST00000487188 MRPL54Q6P161 138 aaKnown RBP5.31□□□□□ -1.56
VPS13D-209ENST00000487188 CLEC2AQ6UVW9 174 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 TMEM144Q7Z5S9 345 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 HAPLN4Q86UW8 402 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 FAM19A2Q8N3H0 131 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 ST6GALNAC3Q8NDV1 305 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 OR5B3Q8NH48 314 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 SPPL3Q8TCT6 385 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 LSM10Q969L4 123 aaKnown RBP5.31□□□□□ -1.56
VPS13D-209ENST00000487188 IGFLR1Q9H665 355 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 ZNF331Q9NQX6 463 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-209ENST00000487188 MTCH1Q9NZJ7 389 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 IGHV1-69-2A0A0G2JMI3 117 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 PATE4P0C8F1 98 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 RAC2P15153 192 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 CTSSP25774 331 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 SPINK9Q5DT21 86 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 NIT1Q86X76 327 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 MMD2Q8IY49 270 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 CST9LQ9H4G1 147 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 GCM1Q9NP62 436 aa5.31□□□□□ -1.56
VPS13D-209ENST00000487188 TRAV9-1A0A075B6T8 112 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 TRBV9A0A0B4J1U6 114 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 IGHV2-70DA0A0C4DH43 119 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 M0R2Z0 102 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 C3orf79P0CE67 100 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 PSG1P11464 419 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 B4GALT1P15291 398 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 TIMP3P35625 211 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 LHX2P50458 406 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 FOXL2P58012 376 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 ZNF816Q0VGE8 651 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-209ENST00000487188 RNASEKQ6P5S7 137 aaKnown RBP5.3□□□□□ -1.56
VPS13D-209ENST00000487188 CRIP3Q6Q6R5 217 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 Q6ZRM9 215 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 C19orf35Q6ZS72 473 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 MRPL21Q7Z2W9 205 aaKnown RBP5.3□□□□□ -1.56
VPS13D-209ENST00000487188 RLN3Q8WXF3 142 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 NPCDR1Q9BY65 106 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 TRAPPC2LQ9UL33 140 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 ATP23Q9Y6H3 246 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 TRANK1O15050 2925 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 IGKV3D-11A0A0A0MRZ8 115 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 SCO2A0A1W2PP80 73 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 MLNRO43193 412 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 ZNF324O75467 553 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-209ENST00000487188 TOMM40O96008 361 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 ZNF32P17041 273 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms