RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 OR10D3Q8NH80 312 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 FNDC9Q8TBE3 224 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 C16orf78Q8WTQ4 265 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 CYGBQ8WWM9 190 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 MND1Q9BWT6 205 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 CDCA4Q9BXL8 241 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 SLC22A4Q9H015 551 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 MS4A6AQ9H2W1 248 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 OR51B6Q9H340 312 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 TMEM106BQ9NUM4 274 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 HHLA2Q9UM44 414 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 COL5A3P25940 1745 aaPredicted RBP1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 ADGRB3O60242 1522 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 PLCH2O75038 1416 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 OTOFQ9HC10 1997 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 PLXNA3P51805 1871 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 SLX4Q8IY92 1834 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 A0A1W2PP64 1363 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 C1orf232A0A0U1RR37 186 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 KNCNA6PVL3 124 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 BIRC5O15392 142 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 STX10O60499 249 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 PSMG1O95456 288 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 CCL3P10147 92 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 CRHBPP24387 322 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 CRYBB3P26998 211 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 CD200P41217 278 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 RPL14P50914 215 aaKnown RBP1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 DEFB103AP81534 67 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 SS18Q15532 418 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 TMEM31Q5JXX7 168 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 LGALS9CQ6DKI2 356 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 Q6ZS52 159 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 Q8WTZ3 238 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 ASB13Q8WXK3 278 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 LLPHQ9BRT6 129 aaKnown RBP1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 NSRP1Q9H0G5 558 aaKnown RBP1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 TXNL4BQ9NX01 149 aaKnown RBP1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 FAM206AQ9NX38 181 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 HDGFL3Q9Y3E1 203 aa1.13□□□□□ -2.23
CCDC88A-212ENST00000474059 DSCAML1Q8TD84 2053 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 TRPM6Q9BX84 2022 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 TRAV8-1A0A0A6YYK1 113 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 MUC21A0A0G2JKD1 596 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 MUC21A0A140T8X8 626 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 A0A1W2PQL4 384 aaPredicted RBP1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 FNDC10F2Z333 226 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 F5H768 121 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 LY6LH3BQJ8 138 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 M0R381 172 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 SLC17A3O00476 420 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 UBFD1O14562 309 aaKnown RBP1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 CETN3O15182 167 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 GSTZ1O43708 216 aaPredicted RBP1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 IL6P05231 212 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 UGT2B7P16662 529 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 IFNGR2P38484 337 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 CA7P43166 264 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 CDK9P50750 372 aaKnown RBP1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 ZNF140P52738 457 aaPredicted RBP1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 TAS2R45P59539 299 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 KRTAP12-1P59990 96 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 HES1Q14469 280 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 C2orf91Q6ZV80 131 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 BAP18Q8IXM2 172 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 C1orf174Q8IYL3 243 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 FAM9CQ8IZT9 166 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 SMIM19Q96E16 107 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 DNAJC30Q96LL9 226 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 MBOAT7Q96N66 472 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 TXNDC17Q9BRA2 123 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 TIPINQ9BVW5 301 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 TTTY12Q9BZ98 90 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 CXCL16Q9H2A7 254 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 SPANXB1Q9NS25 103 aaPredicted RBP1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 PLEKHJ1Q9NW61 149 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 EMC3Q9P0I2 261 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 PSMD13Q9UNM6 376 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 ATG2BQ96BY7 2078 aa1.12□□□□□ -2.23
CCDC88A-212ENST00000474059 TEX50A0A1B0GTY4 177 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 GRIFINA4D1Z8 144 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 OR11H12B2RN74 326 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 GOLGA8KD6RF30 607 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 H3BPC8 53 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 GOLGA8MH3BSY2 632 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 OVOL1O14753 267 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 ARL14EPLP0DKL9 152 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 GZMBP10144 247 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 CD36P16671 472 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 CD79BP40259 229 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 SERPINB10P48595 397 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 MAP3K7CLP57077 242 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 FABP5Q01469 135 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 GNA13Q14344 377 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 PCOTHQ58A44 107 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 AMTNQ6UX39 209 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 TMEM251Q8N6I4 163 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 OR2D3Q8NGH3 330 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 OR11H2Q8NH07 326 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 RNASE11Q8TAA1 199 aaKnown RBP1.11□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms