RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 CDKN1AP38936 164 aa17.16■□□□□ 0.34
SHOX2-203ENST00000441443 SLC23A3Q6PIS1 610 aa17.16■□□□□ 0.34
SHOX2-203ENST00000441443 LINC01551Q86U37 167 aa17.16■□□□□ 0.34
SHOX2-203ENST00000441443 FOXB1Q99853 325 aa17.16■□□□□ 0.34
SHOX2-203ENST00000441443 MIEN1Q9BRT3 115 aa17.16■□□□□ 0.34
SHOX2-203ENST00000441443 TTC28Q96AY4 2481 aa17.16■□□□□ 0.34
SHOX2-203ENST00000441443 SYNGR1O43759 233 aa17.16■□□□□ 0.34
SHOX2-203ENST00000441443 IGLV2-14P01704 120 aa17.16■□□□□ 0.34
SHOX2-203ENST00000441443 PRDX4Q13162 271 aa17.16■□□□□ 0.34
SHOX2-203ENST00000441443 SRSF7Q16629 238 aaKnown RBP eCLIP17.16■□□□□ 0.34
SHOX2-203ENST00000441443 ZNF585BQ52M93 769 aa17.16■□□□□ 0.34
SHOX2-203ENST00000441443 LSM10Q969L4 123 aaKnown RBP17.16■□□□□ 0.34
SHOX2-203ENST00000441443 IMMP2LQ96T52 175 aa17.16■□□□□ 0.34
SHOX2-203ENST00000441443 MAP1BP46821 2468 aaKnown RBP17.16■□□□□ 0.34
SHOX2-203ENST00000441443 WDR1O75083 606 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 TFF3Q07654 80 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 ZNF114Q8NC26 417 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 SGMS2Q8NHU3 365 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 VN1R17PQ8TDU5 208 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 GPR35Q9HC97 309 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 FAM90A10PA6NDY2 464 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 FAM90A18PA6NE21 464 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 FAM90A16PA6NEW6 464 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 FAM90A20PA6NIJ5 464 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 FAM90A8PA6NJQ4 464 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 FAM90A7PA6NKC0 464 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 FAM90A22PA8MWA6 464 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 FAM90A12PA8MX19 464 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 FAM90A5PA8MXJ8 464 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 FAM90A23PA8MXZ1 464 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 FAM90A15PP0C7V4 464 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 FAM90A13PP0C7W8 464 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 FAM90A14PP0C7W9 464 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 FAM90A24PP0C7X0 464 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 Q8NFD4 153 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 OR2J1Q9GZK6 312 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 ZNF391Q9UJN7 358 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 ADAMTS20P59510 1910 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 TRAPPC2LH3BP13 241 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 HNF1AP20823 631 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 PCOLCEQ15113 449 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 TPTE2P1Q5T6R2 138 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 MRPL14Q6P1L8 145 aaKnown RBP17.15■□□□□ 0.34
SHOX2-203ENST00000441443 CPEB3Q8NE35 698 aaKnown RBP17.15■□□□□ 0.34
SHOX2-203ENST00000441443 TMEM9BQ9NQ34 198 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 FRYQ5TBA9 3013 aa17.15■□□□□ 0.34
SHOX2-203ENST00000441443 TNFSF13O75888 250 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 VENTXO95231 258 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 LINC00614P0C842 121 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 KRTAP27-1Q3LI81 207 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 TMEM144Q7Z5S9 345 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 DTD1Q8TEA8 209 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 PSMF1Q92530 271 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 DOCK7Q96N67 2140 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 YPEL1O60688 119 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 NDUFB4O95168 129 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 SOX8P57073 446 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 AAED1Q7RTV5 226 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 YPEL2Q96QA6 119 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 HSPB9Q9BQS6 159 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 TP53TG3Q9ULZ0 132 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 PPIAL4AQ9Y536 164 aa17.14■□□□□ 0.33
SHOX2-203ENST00000441443 MLNRO43193 412 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 UMODP07911 640 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 ATP5G3P48201 142 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 GNB1P62873 340 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 AGBL5Q8NDL9 886 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 ZDHHC11Q9H8X9 412 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 CLN8Q9UBY8 286 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 EP300Q09472 2414 aaPredicted RBP17.13■□□□□ 0.33
SHOX2-203ENST00000441443 TCF21O43680 179 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 TRAPPC6AO75865 159 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 TRA2AQ13595 282 aaKnown RBP eCLIP17.13■□□□□ 0.33
SHOX2-203ENST00000441443 TMPRSS7Q7RTY8 843 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 C20orf144Q9BQM9 153 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 DNAJC13O75165 2243 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 LIFP15018 202 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 OTX2P32243 289 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 TMEM14EPQ6UXP3 125 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 MKXQ8IYA7 352 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 TECTBQ96PL2 329 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 PARD6GQ9BYG4 376 aaPredicted RBP17.13■□□□□ 0.33
SHOX2-203ENST00000441443 MSL2Q9HCI7 577 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 ELOVL5Q9NYP7 299 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 TIMM9Q9Y5J7 89 aa17.13■□□□□ 0.33
SHOX2-203ENST00000441443 RBFOX2O43251 390 aaKnown RBP eCLIP17.12■□□□□ 0.33
SHOX2-203ENST00000441443 LAMTOR5O43504 91 aa17.12■□□□□ 0.33
SHOX2-203ENST00000441443 FGFRL1Q8N441 504 aa17.12■□□□□ 0.33
SHOX2-203ENST00000441443 OR1L1Q8NH94 360 aa17.12■□□□□ 0.33
SHOX2-203ENST00000441443 CPT1CQ8TCG5 803 aa17.12■□□□□ 0.33
SHOX2-203ENST00000441443 RYDENQ9NUL5 291 aaKnown RBP17.12■□□□□ 0.33
SHOX2-203ENST00000441443 SIAH2O43255 324 aa17.12■□□□□ 0.33
SHOX2-203ENST00000441443 WNT2P09544 360 aa17.12■□□□□ 0.33
SHOX2-203ENST00000441443 LINC00310P59036 64 aa17.12■□□□□ 0.33
SHOX2-203ENST00000441443 C9orf135Q5VTT2 229 aa17.12■□□□□ 0.33
SHOX2-203ENST00000441443 TEX43Q6ZNM6 134 aa17.12■□□□□ 0.33
SHOX2-203ENST00000441443 VAMP8Q9BV40 100 aa17.12■□□□□ 0.33
SHOX2-203ENST00000441443 OR51B6Q9H340 312 aa17.12■□□□□ 0.33
SHOX2-203ENST00000441443 IL6RP08887 468 aaPredicted RBP17.11■□□□□ 0.33
SHOX2-203ENST00000441443 COX5AP20674 150 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms