RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 LIMS2Q7Z4I7 341 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 SLC37A2Q8TED4 501 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 ASB10Q8WXI3 467 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 ALG14Q96F25 216 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 TLNRD1Q9H1K6 362 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 G6PC2Q9NQR9 355 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 WSB2Q9NYS7 404 aaPredicted RBP6.28□□□□□ -1.4
VPS53-204ENST00000437048 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.28□□□□□ -1.4
VPS53-204ENST00000437048 IFITM2Q01629 132 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 PRSS36Q5K4E3 855 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 MYLKQ15746 1914 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 IGFBP6P24592 240 aaPredicted RBP6.28□□□□□ -1.4
VPS53-204ENST00000437048 ISOC2Q96AB3 205 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 MYO18BQ8IUG5 2567 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 P2RY6Q15077 328 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 C19orf48Q6RUI8 117 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 FAM90A1Q86YD7 464 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 WDYHV1Q96HA8 205 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 ZNF430Q9H8G1 570 aaPredicted RBP6.28□□□□□ -1.4
VPS53-204ENST00000437048 F5H697 171 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 ERVH48-1M5A8F1 160 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 ERV3-1Q14264 604 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 TCTN1Q2MV58 587 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 BTLAQ7Z6A9 289 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 ETFBKMTQ8IXQ9 262 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 CADM4Q8NFZ8 388 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 ANAPC13Q9BS18 74 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 PAGE4O60829 102 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 ICOSLGO75144 302 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 INAFM2P0DMQ5 153 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 BHLHA15Q7RTS1 189 aaPredicted RBP6.28□□□□□ -1.4
VPS53-204ENST00000437048 A0A1B0GUT8 65 aa6.27□□□□□ -1.4
VPS53-204ENST00000437048 MRPS11P82912 194 aaKnown RBP6.27□□□□□ -1.4
VPS53-204ENST00000437048 GAGE2BQ13066 116 aa6.27□□□□□ -1.4
VPS53-204ENST00000437048 DEFB110Q30KQ9 67 aa6.27□□□□□ -1.4
VPS53-204ENST00000437048 GAGE2EQ4V326 116 aa6.27□□□□□ -1.4
VPS53-204ENST00000437048 UNQ9370/PRO34162Q6UXP9 181 aa6.27□□□□□ -1.4
VPS53-204ENST00000437048 BATF2Q8N1L9 274 aa6.27□□□□□ -1.4
VPS53-204ENST00000437048 GAGE2DQ9UEU5 116 aa6.27□□□□□ -1.4
VPS53-204ENST00000437048 TNFSF14O43557 240 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 OR51G1Q8NGK1 321 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 TMEM170AQ8WVE7 144 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 TMEM106BQ9NUM4 274 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 TRBV23-1A0A0A0MS06 115 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 TMEM189A5PLL7 270 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 K7N7A8 449 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 PRICKLE4Q2TBC4 344 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 RHBDD2Q6NTF9 364 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 ALKBH3Q96Q83 286 aaPredicted RBP6.27□□□□□ -1.41
VPS53-204ENST00000437048 RAXQ9Y2V3 346 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 TCRBV16S1A1N1A0A5B0 115 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 PPP2CBP62714 309 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 RPL8P62917 257 aaKnown RBP6.27□□□□□ -1.41
VPS53-204ENST00000437048 C19orf54Q5BKX5 351 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 A0A1B0GWB2 263 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 OR9G9P0C7N8 305 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 RBM11P57052 281 aaKnown RBP6.27□□□□□ -1.41
VPS53-204ENST00000437048 AGERQ15109 404 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 SRSF7Q16629 238 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS53-204ENST00000437048 FAAP20Q6NZ36 180 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 OR8A1Q8NGG7 326 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 OR4C3Q8NH37 302 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 IL36BQ9NZH7 164 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 IGHV1-69-2A0A0G2JMI3 117 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 EFSO43281 561 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 LYZL6O75951 148 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 WDR25Q64LD2 544 aaPredicted RBP6.27□□□□□ -1.41
VPS53-204ENST00000437048 NKG7Q16617 165 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 FAM27D1Q5T7N8 215 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 RSRP1Q9BUV0 290 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 FOXL1Q12952 345 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 UFC1Q9Y3C8 167 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 ASPDHA6ND91 283 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 ITGB1BP1O14713 200 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 ATG4DQ86TL0 474 aaPredicted RBP6.27□□□□□ -1.41
VPS53-204ENST00000437048 SLC6A13Q9NSD5 602 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 J3QR06 171 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 EFNB1P98172 346 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 DTX1Q86Y01 620 aa6.27□□□□□ -1.41
VPS53-204ENST00000437048 SS18L1O75177 396 aaPredicted RBP6.26□□□□□ -1.41
VPS53-204ENST00000437048 BCDIN3DQ7Z5W3 292 aaKnown RBP6.26□□□□□ -1.41
VPS53-204ENST00000437048 TMEM252Q8N6L7 170 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 MS4A5Q9H3V2 200 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 RBMY1BA6NDE4 496 aaKnown RBP6.26□□□□□ -1.41
VPS53-204ENST00000437048 RBMY1EA6NEQ0 496 aaKnown RBP6.26□□□□□ -1.41
VPS53-204ENST00000437048 RBMY1DP0C7P1 496 aaKnown RBP6.26□□□□□ -1.41
VPS53-204ENST00000437048 ASAH2BP0C7U1 165 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 RBMY1A1P0DJD3 496 aaKnown RBP6.26□□□□□ -1.41
VPS53-204ENST00000437048 RBMY1CP0DJD4 496 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 PI3P19957 117 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 INSM1Q01101 510 aaPredicted RBP6.26□□□□□ -1.41
VPS53-204ENST00000437048 ORMDL3Q8N138 153 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 CDKN3Q16667 212 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 ZNF645Q8N7E2 425 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 CHTOPQ9Y3Y2 248 aaKnown RBP6.26□□□□□ -1.41
VPS53-204ENST00000437048 SPCS1Q9Y6A9 102 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 PXMP4Q9Y6I8 212 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 EDIL3O43854 480 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 TSPAN7P41732 249 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 FGF12P61328 243 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 206.1 ms