RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 TPRX1Q8N7U7 411 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 LIN7CQ9NUP9 197 aaKnown RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 SLC17A4Q9Y2C5 497 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 SMAD7O15105 426 aaKnown RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 TMPRSS2O15393 492 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 GALR2O43603 387 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 C1orf105O95561 183 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 OR10D3Q8NH80 312 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 HS3ST2Q9Y278 367 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 SHISA6Q6ZSJ9 500 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 SSC4DQ8WTU2 575 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 RPRMQ9NS64 109 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 ENTPD2Q9Y5L3 495 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 NCOR1O75376 2440 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF831Q5JPB2 1677 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 DEGS1O15121 323 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 CD22P20273 847 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 COA6Q5JTJ3 125 aaKnown RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 TIMP4Q99727 224 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 SH2D2AQ9NP31 389 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 TAAR3PQ9P1P4 343 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 TIGITQ495A1 244 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 OR51H1Q8NH63 302 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 QTRT1Q9BXR0 403 aaKnown RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 YTHDF2Q9Y5A9 579 aaKnown RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 PAPPA2Q9BXP8 1791 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 MT-ATP8P03928 68 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 C1QTNF9P0C862 333 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 MFSD12Q6NUT3 480 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 MMABQ96EY8 250 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 OR2A5Q96R48 311 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 CISD1Q9NZ45 108 aaKnown RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 NYNRINQ9P2P1 1898 aaKnown RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 NGFRP08138 427 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 TRAT1Q6PIZ9 186 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 ANKRD33Q7Z3H0 272 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 OR4C13Q8NGP0 309 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 A1L4Q6 167 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 FAM157AC9JC47 383 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 PAQR9Q6ZVX9 377 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 TMEM191AQ9H0A3 160 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 SHHQ15465 462 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF519Q8TB69 540 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 NUDT22Q9BRQ3 303 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 A0A0J9YY10 115 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 LMX1BO60663 402 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 FOXL1Q12952 345 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 KTI12Q96EK9 354 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 MED12Q93074 2177 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 IGHV2-26A0A0B4J1V2 119 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 SOCS1O15524 211 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 FCGR2AP12318 317 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 IGFBP4P22692 258 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 IGFBP6P24592 240 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 CAMPP49913 170 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 CD5LO43866 347 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 CT45A6P0DMU7 189 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 CT45A5P0DMU8 189 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 CT45A7P0DMV0 189 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 SRFP11831 508 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 CT45A1Q5HYN5 189 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 FADS6Q8N9I5 356 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 CT45A3Q8NHU0 189 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 C9orf118A6NHY6 69 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 E9PQ18 207 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF17P17021 662 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 MTCP1P56278 107 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 SPSB4Q96A44 273 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 LCTP09848 1927 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 TMSB15BA0A087X1C1 80 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 FAM181BA6NEQ2 426 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 TUSC2O75896 110 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 PLGLB1Q02325 96 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 SPSB3Q6PJ21 355 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 NAA60Q9H7X0 242 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 DOCK4Q8N1I0 1966 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 DSPPQ9NZW4 1301 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 H7C2G1 150 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 RPS11P62280 158 aaKnown RBP eCLIP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 SGCBQ16585 318 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 DOLPP1Q86YN1 238 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 LINC00346Q8IVM7 164 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 TIMP1P01033 207 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 PFN1P07737 140 aaKnown RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 GPM6AP51674 278 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 ROM1Q03395 351 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 PRICKLE4Q2TBC4 344 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 NXF5Q9H1B4 397 aaKnown RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 SNRNP200O75643 2136 aaKnown RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 SH2D7A6NKC9 451 aaPredicted RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 SEC11AP67812 179 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 PSG6Q00889 435 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 NOGQ13253 232 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 MRPS17Q9Y2R5 130 aaKnown RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 RND2P52198 227 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 LILRA3Q8N6C8 439 aaPredicted RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 PRR32B1ATL7 298 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 KBTBD11O94819 623 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 OR3A4PP47883 348 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 OR51G1Q8NGK1 321 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms