RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SLC25A53Q5H9E4 307 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 C12orf73Q69YU5 71 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 CD300LDQ6UXZ3 194 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 C11orf68Q9H3H3 251 aaKnown RBP5.98□□□□□ -1.45
SCN1A-204ENST00000423058 IGLV3-16A0A075B6K0 115 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 CISD3P0C7P0 127 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 ASAH2BP0C7U1 165 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 ANOS1P23352 680 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 OR10J1P30954 320 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 FGF9P31371 208 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-204ENST00000423058 LRRC75AQ8NAA5 344 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 TNFRSF18Q9Y5U5 241 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 PPIAL4CA0A0B4J2A2 164 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 A0A1W2PPC1 479 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 RPLP1P05386 114 aaKnown RBP5.97□□□□□ -1.45
SCN1A-204ENST00000423058 PPIAL4GP0DN37 164 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 CCL4P13236 92 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 HOXA6P31267 233 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 HMGA2P52926 109 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 FAM209BQ5JX69 171 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 DNLZQ5SXM8 178 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 CHST5Q9GZS9 411 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 SIPA1L3O60292 1781 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-204ENST00000423058 PITX3O75364 302 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 CDKN2AP42771 156 aaKnown RBP5.97□□□□□ -1.45
SCN1A-204ENST00000423058 TCL1AP56279 114 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 PMS2CLQ68D20 193 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 STPG2Q8N412 459 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 PHF3Q92576 2039 aaKnown RBP5.97□□□□□ -1.45
SCN1A-204ENST00000423058 TMSB15BA0A087X1C1 80 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 IGKV3OR2-268A0A0C4DH90 116 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 CDS2O95674 445 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 FABP2P12104 132 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 NRN1LQ496H8 165 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 UBE2DNLQ8IWF7 75 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 FAM168AQ92567 244 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 LSM10Q969L4 123 aaKnown RBP5.97□□□□□ -1.45
SCN1A-204ENST00000423058 R3HDMLQ9H3Y0 253 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 PATE4P0C8F1 98 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 MMP9P14780 707 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 FCGR2BP31994 310 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-204ENST00000423058 ISXQ2M1V0 245 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 FAM27D1Q5T7N8 215 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 SEZ6L2Q6UXD5 910 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 RIMKLAQ8IXN7 391 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 PHLDA1Q8WV24 401 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-204ENST00000423058 IFT22Q9H7X7 185 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 TCF20Q9UGU0 1960 aaKnown RBP5.97□□□□□ -1.45
SCN1A-204ENST00000423058 CEP290O15078 2479 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 CEACAM4O75871 244 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 CCL3P10147 92 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 CSF2RBP32927 897 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 RPL29P47914 159 aaKnown RBP5.97□□□□□ -1.45
SCN1A-204ENST00000423058 PSG6Q00889 435 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 CEACAM21Q3KPI0 293 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 CFAP161Q6P656 301 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 CLEC7AQ9BXN2 247 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 STRCP1A6NGW2 1772 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 A0A0U1RQV5 110 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 C5orf67F2Z3F1 127 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 LY6EQ16553 131 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 OR8G5Q8NG78 346 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 NEU4Q8WWR8 484 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-204ENST00000423058 GBF1Q92538 1859 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 C19orf24Q9BVV8 132 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 CACNA1IQ9P0X4 2223 aa5.97□□□□□ -1.45
SCN1A-204ENST00000423058 TCRBV5S2A0A599 114 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 CTDSPLO15194 276 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 C19orf48Q6RUI8 117 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 DYRK2Q92630 601 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 MRPL24Q96A35 216 aaKnown RBP5.96□□□□□ -1.45
SCN1A-204ENST00000423058 TXNDC17Q9BRA2 123 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 SERGEFQ9UGK8 458 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 BOLA1Q9Y3E2 137 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 SYNGR3O43761 229 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 SMIM6P0DI80 62 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 DLK1P80370 383 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 SERF2P84101 59 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 PRSS53Q2L4Q9 553 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 CYB5R2Q6BCY4 276 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 TMEM190Q8WZ59 177 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 WDR34Q96EX3 536 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 LRRC3BQ96PB8 259 aa5.96□□□□□ -1.45
SCN1A-204ENST00000423058 LINC00862A6NCI5 91 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 TMEM50BP56557 158 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 RAE1P78406 368 aaKnown RBP5.96□□□□□ -1.46
SCN1A-204ENST00000423058 QTRT1Q9BXR0 403 aaKnown RBP5.96□□□□□ -1.46
SCN1A-204ENST00000423058 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.96□□□□□ -1.46
SCN1A-204ENST00000423058 LRRK1Q38SD2 2015 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 PLXND1Q9Y4D7 1925 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 LNP1A1A4G5 178 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 CD74P04233 296 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 RPS4XP62701 263 aaKnown RBP5.96□□□□□ -1.46
SCN1A-204ENST00000423058 MRPL54Q6P161 138 aaKnown RBP5.96□□□□□ -1.46
SCN1A-204ENST00000423058 FAM131CQ96AQ9 280 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 ABHD1Q96SE0 405 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 CCL13Q99616 98 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 IDI2-AS1Q9NZ38 188 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 IGHV3-21A0A0B4J1V1 117 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 C7orf66A4D0T2 115 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms