RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ARAP2Q8WZ64 1704 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 SELENOTP62341 195 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 EIF3GO75821 320 aaKnown RBP eCLIP11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 CFDP00746 253 aaPredicted RBP11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 FAM106CPP0CH98 169 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 ARL14EPLP0DKL9 152 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 KIRREL2Q6UWL6 708 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 CCL26Q9Y258 94 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 TRAV17A0A0B4J275 112 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 LDLRAD4O15165 306 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 LGALS1P09382 135 aaKnown RBP11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 AGAP20933 346 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 RIPPLY3P57055 190 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 TTC9CQ8N5M4 171 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 COL11A1P12107 1806 aaPredicted RBP11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 A0A0B4J2E0 115 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 A0A1B0GX12 115 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 GZMHP20718 246 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 ORAOV1Q8WV07 137 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 MEGF9Q9H1U4 602 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 OPN3Q9H1Y3 402 aaPredicted RBP11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 TMEM106BQ9NUM4 274 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 FRRS1LQ9P0K9 344 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 MVDP53602 400 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 PSMG4Q5JS54 123 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 ZNF296Q8WUU4 475 aaPredicted RBP11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 G6PC2Q9NQR9 355 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 PSG2P11465 335 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 DUX5Q96PT3 197 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 SLC25A37Q9NYZ2 338 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 CCSMST1Q4G0I0 132 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 PTPMT1Q8WUK0 201 aaPredicted RBP11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 SMIM14Q96QK8 99 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 TNFSF18Q9UNG2 199 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 MESTQ5EB52 335 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 TINAGQ9UJW2 476 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 KBTBD11-OT1A0A1B0GTJ5 212 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 CEACAM4O75871 244 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 SYT11Q9BT88 431 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 MMP25Q9NPA2 562 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 ABCA4P78363 2273 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 ZNF32P17041 273 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 HIST1H4AP62805 103 aaKnown RBP11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 DPTQ07507 201 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 SNAI3Q3KNW1 292 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 HSPB1P04792 205 aaKnown RBP11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 PTCRAQ6ISU1 281 aaPredicted RBP11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 SLC25A10Q9UBX3 287 aaPredicted RBP11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 MUC1P15941 1255 aaPredicted RBP11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 RPS11P62280 158 aaKnown RBP eCLIP11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 FAM209AQ5JX71 171 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 FAM159AQ6UWV7 190 aa11.67□□□□□ -0.54
CCDC88A-204ENST00000413716 PUSL1Q8N0Z8 303 aaKnown RBP11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 RNF182Q8N6D2 247 aa11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 TDGF1P13385 188 aa11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 NT5CQ8TCD5 201 aa11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 YAE1D1Q9NRH1 226 aa11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 KCNS1Q96KK3 526 aa11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 NUTF2P61970 127 aaKnown RBP11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 RNASEH2CQ8TDP1 164 aaKnown RBP11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 ALX4Q9H161 411 aaPredicted RBP11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 PRR13Q9NZ81 148 aa11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 CCL2P13500 99 aa11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 F12P00748 615 aaPredicted RBP11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 ACSF3Q4G176 576 aaPredicted RBP11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 ADAD2Q8NCV1 583 aaKnown RBP11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 ZNF48Q96MX3 618 aaPredicted RBP11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 SLC6A13Q9NSD5 602 aa11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 RNF186Q9NXI6 227 aa11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 DSPPQ9NZW4 1301 aa11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 PGPEP1LA6NFU8 196 aa11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 NDUFA3O95167 84 aa11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 ZBP1Q9H171 429 aa11.66□□□□□ -0.54
CCDC88A-204ENST00000413716 ATP6V0CP27449 155 aa11.65□□□□□ -0.54
CCDC88A-204ENST00000413716 CCL27Q9Y4X3 112 aa11.65□□□□□ -0.54
CCDC88A-204ENST00000413716 GAGE2BQ13066 116 aa11.65□□□□□ -0.54
CCDC88A-204ENST00000413716 RCC1P18754 421 aaPredicted RBP11.65□□□□□ -0.54
CCDC88A-204ENST00000413716 AMER3Q8N944 861 aa11.65□□□□□ -0.54
CCDC88A-204ENST00000413716 OR8B12Q8NGG6 310 aa11.65□□□□□ -0.54
CCDC88A-204ENST00000413716 SCGB3A1Q96QR1 104 aa11.65□□□□□ -0.54
CCDC88A-204ENST00000413716 EP300Q09472 2414 aaPredicted RBP11.65□□□□□ -0.54
CCDC88A-204ENST00000413716 SSPNQ14714 243 aa11.65□□□□□ -0.54
CCDC88A-204ENST00000413716 SYNGR3O43761 229 aa11.65□□□□□ -0.54
CCDC88A-204ENST00000413716 LINC00869P0C866 280 aa11.65□□□□□ -0.54
CCDC88A-204ENST00000413716 MRPL52Q86TS9 123 aaKnown RBP11.65□□□□□ -0.54
CCDC88A-204ENST00000413716 TOMM7Q9P0U1 55 aa11.65□□□□□ -0.54
CCDC88A-204ENST00000413716 TNFSF14O43557 240 aa11.65□□□□□ -0.54
CCDC88A-204ENST00000413716 ASIPP42127 132 aa11.65□□□□□ -0.54
CCDC88A-204ENST00000413716 KLK10O43240 276 aa11.65□□□□□ -0.55
CCDC88A-204ENST00000413716 CXCL3P19876 107 aa11.65□□□□□ -0.55
CCDC88A-204ENST00000413716 PLNP26678 52 aa11.65□□□□□ -0.55
CCDC88A-204ENST00000413716 RPL32P62910 135 aaKnown RBP11.65□□□□□ -0.55
CCDC88A-204ENST00000413716 ANKRD34AQ69YU3 496 aa11.65□□□□□ -0.55
CCDC88A-204ENST00000413716 SRSF12Q8WXF0 261 aaKnown RBP11.65□□□□□ -0.55
CCDC88A-204ENST00000413716 PTP4A1Q93096 173 aa11.65□□□□□ -0.55
CCDC88A-204ENST00000413716 HPRT1P00492 218 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 THAP10Q9P2Z0 257 aaPredicted RBP11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 A0A0A6YYD5 115 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 PF4V1P10720 104 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 OR4D11Q8NGI4 311 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms