RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 OR2D2Q9H210 308 aa17.25■□□□□ 0.35
CLN3-207ENST00000395653 LIN7CQ9NUP9 197 aaKnown RBP17.25■□□□□ 0.35
CLN3-207ENST00000395653 PEX14O75381 377 aa17.24■□□□□ 0.35
CLN3-207ENST00000395653 HLA-DQB1P01920 261 aa17.24■□□□□ 0.35
CLN3-207ENST00000395653 MC5RP33032 325 aa17.24■□□□□ 0.35
CLN3-207ENST00000395653 C9orf152Q5JTZ5 239 aa17.24■□□□□ 0.35
CLN3-207ENST00000395653 Q8N9W7 124 aa17.24■□□□□ 0.35
CLN3-207ENST00000395653 OR5AN1Q8NGI8 311 aa17.24■□□□□ 0.35
CLN3-207ENST00000395653 RBM7Q9Y580 266 aaKnown RBP17.24■□□□□ 0.35
CLN3-207ENST00000395653 H0YJW9 148 aa17.23■□□□□ 0.35
CLN3-207ENST00000395653 ARPC4P59998 168 aa17.23■□□□□ 0.35
CLN3-207ENST00000395653 FAM131AQ6UXB0 335 aa17.23■□□□□ 0.35
CLN3-207ENST00000395653 WIPF2Q8TF74 440 aaPredicted RBP17.23■□□□□ 0.35
CLN3-207ENST00000395653 ISOC1Q96CN7 298 aa17.23■□□□□ 0.35
CLN3-207ENST00000395653 SDHAF2Q9NX18 166 aa17.23■□□□□ 0.35
CLN3-207ENST00000395653 OR2W1Q9Y3N9 320 aa17.23■□□□□ 0.35
CLN3-207ENST00000395653 H3BMQ9 156 aa17.22■□□□□ 0.35
CLN3-207ENST00000395653 NFYAP23511 347 aaPredicted RBP17.22■□□□□ 0.35
CLN3-207ENST00000395653 PRSS3P35030 304 aa17.22■□□□□ 0.35
CLN3-207ENST00000395653 F2RL1P55085 397 aa17.22■□□□□ 0.35
CLN3-207ENST00000395653 ACTBP60709 375 aa17.22■□□□□ 0.35
CLN3-207ENST00000395653 MMDQ15546 238 aa17.22■□□□□ 0.35
CLN3-207ENST00000395653 GLDNQ6ZMI3 551 aaPredicted RBP17.22■□□□□ 0.35
CLN3-207ENST00000395653 FAM71E2Q8N5Q1 922 aa17.22■□□□□ 0.35
CLN3-207ENST00000395653 DYNC2LI1Q8TCX1 351 aa17.22■□□□□ 0.35
CLN3-207ENST00000395653 SNAPC3Q92966 411 aa17.22■□□□□ 0.35
CLN3-207ENST00000395653 RBMXL1Q96E39 390 aaKnown RBP17.22■□□□□ 0.35
CLN3-207ENST00000395653 IFT46Q9NQC8 304 aa17.22■□□□□ 0.35
CLN3-207ENST00000395653 CCDC59Q9P031 241 aaKnown RBP17.22■□□□□ 0.35
CLN3-207ENST00000395653 ANAPC10Q9UM13 185 aa17.22■□□□□ 0.35
CLN3-207ENST00000395653 WASHC3Q9Y3C0 194 aa17.22■□□□□ 0.35
CLN3-207ENST00000395653 MEIS3P1A6NDR6 274 aa17.21■□□□□ 0.35
CLN3-207ENST00000395653 DRAXINQ8NBI3 349 aaPredicted RBP17.21■□□□□ 0.35
CLN3-207ENST00000395653 RASL11BQ9BPW5 248 aa17.21■□□□□ 0.35
CLN3-207ENST00000395653 NECAP2Q9NVZ3 263 aa17.21■□□□□ 0.35
CLN3-207ENST00000395653 MRPS7Q9Y2R9 242 aaKnown RBP17.21■□□□□ 0.35
CLN3-207ENST00000395653 CEPT1Q9Y6K0 416 aa17.21■□□□□ 0.35
CLN3-207ENST00000395653 FAM25AB3EWG3 89 aa17.21■□□□□ 0.34
CLN3-207ENST00000395653 FAM25CB3EWG5 89 aa17.21■□□□□ 0.34
CLN3-207ENST00000395653 FAM25GB3EWG6 89 aa17.21■□□□□ 0.34
CLN3-207ENST00000395653 M0R1X1 148 aa17.21■□□□□ 0.34
CLN3-207ENST00000395653 RBBP9O75884 186 aa17.21■□□□□ 0.34
CLN3-207ENST00000395653 TUSC2O75896 110 aa17.21■□□□□ 0.34
CLN3-207ENST00000395653 IGHG2P01859 326 aa17.21■□□□□ 0.34
CLN3-207ENST00000395653 LUMP51884 338 aaPredicted RBP17.21■□□□□ 0.34
CLN3-207ENST00000395653 ZNF383Q8NA42 475 aa17.21■□□□□ 0.34
CLN3-207ENST00000395653 OR5AP2Q8NGF4 316 aa17.21■□□□□ 0.34
CLN3-207ENST00000395653 RITA1Q96K30 269 aa17.21■□□□□ 0.34
CLN3-207ENST00000395653 SCPEP1Q9HB40 452 aa17.21■□□□□ 0.34
CLN3-207ENST00000395653 ADAM30Q9UKF2 790 aa17.21■□□□□ 0.34
CLN3-207ENST00000395653 H7C2Y5 167 aa17.2■□□□□ 0.34
CLN3-207ENST00000395653 NBR2O15453 112 aa17.2■□□□□ 0.34
CLN3-207ENST00000395653 APOA2P02652 100 aa17.2■□□□□ 0.34
CLN3-207ENST00000395653 SLC35E3Q7Z769 313 aa17.2■□□□□ 0.34
CLN3-207ENST00000395653 GPX8Q8TED1 209 aa17.2■□□□□ 0.34
CLN3-207ENST00000395653 C5orf30Q96GV9 206 aa17.2■□□□□ 0.34
CLN3-207ENST00000395653 RNF5Q99942 180 aa17.2■□□□□ 0.34
CLN3-207ENST00000395653 SLC22A5O76082 557 aa17.19■□□□□ 0.34
CLN3-207ENST00000395653 TPPPO94811 219 aa17.19■□□□□ 0.34
CLN3-207ENST00000395653 FCER2P06734 321 aa17.19■□□□□ 0.34
CLN3-207ENST00000395653 NAT1P18440 290 aa17.19■□□□□ 0.34
CLN3-207ENST00000395653 LINC00205P59089 165 aa17.19■□□□□ 0.34
CLN3-207ENST00000395653 PDPNQ86YL7 162 aa17.19■□□□□ 0.34
CLN3-207ENST00000395653 SNX29P2Q8IUI4 249 aa17.19■□□□□ 0.34
CLN3-207ENST00000395653 ZNF645Q8N7E2 425 aa17.19■□□□□ 0.34
CLN3-207ENST00000395653 NPBQ8NG41 125 aa17.19■□□□□ 0.34
CLN3-207ENST00000395653 EXTL2Q9UBQ6 330 aa17.19■□□□□ 0.34
CLN3-207ENST00000395653 SULT1C2O00338 296 aa17.18■□□□□ 0.34
CLN3-207ENST00000395653 KCNAB3O43448 404 aa17.18■□□□□ 0.34
CLN3-207ENST00000395653 FBXO24O75426 580 aa17.18■□□□□ 0.34
CLN3-207ENST00000395653 NDUFA3O95167 84 aa17.18■□□□□ 0.34
CLN3-207ENST00000395653 OR5H8P0DN80 308 aa17.18■□□□□ 0.34
CLN3-207ENST00000395653 CNTFRP26992 372 aa17.18■□□□□ 0.34
CLN3-207ENST00000395653 THBS3P49746 956 aa17.18■□□□□ 0.34
CLN3-207ENST00000395653 TAGLNQ01995 201 aaKnown RBP17.18■□□□□ 0.34
CLN3-207ENST00000395653 CDK10Q15131 360 aa17.18■□□□□ 0.34
CLN3-207ENST00000395653 PRR31Q5SQ13 230 aa17.18■□□□□ 0.34
CLN3-207ENST00000395653 CENPVQ7Z7K6 275 aaPredicted RBP17.18■□□□□ 0.34
CLN3-207ENST00000395653 C11orf44Q8N8P7 122 aa17.18■□□□□ 0.34
CLN3-207ENST00000395653 MIXL1Q9H2W2 232 aa17.18■□□□□ 0.34
CLN3-207ENST00000395653 KIAA1456Q9P272 454 aa17.18■□□□□ 0.34
CLN3-207ENST00000395653 IGKV1D-13A0A0B4J2D9 117 aa17.17■□□□□ 0.34
CLN3-207ENST00000395653 M0QZ24 198 aa17.17■□□□□ 0.34
CLN3-207ENST00000395653 RGS5O15539 181 aa17.17■□□□□ 0.34
CLN3-207ENST00000395653 IGKV1-13P0DP09 117 aa17.17■□□□□ 0.34
CLN3-207ENST00000395653 FCGR2CP31995 323 aa17.17■□□□□ 0.34
CLN3-207ENST00000395653 FOXRED2Q8IWF2 684 aa17.17■□□□□ 0.34
CLN3-207ENST00000395653 OR5AU1Q8NGC0 362 aa17.17■□□□□ 0.34
CLN3-207ENST00000395653 ADTRPQ96IZ2 230 aa17.17■□□□□ 0.34
CLN3-207ENST00000395653 SLC35D1Q9NTN3 355 aa17.17■□□□□ 0.34
CLN3-207ENST00000395653 J3QRK9 145 aa17.16■□□□□ 0.34
CLN3-207ENST00000395653 CTDSP2O14595 271 aa17.16■□□□□ 0.34
CLN3-207ENST00000395653 IGKV1-16P04430 117 aa17.16■□□□□ 0.34
CLN3-207ENST00000395653 DUTP33316 252 aaKnown RBP17.16■□□□□ 0.34
CLN3-207ENST00000395653 TAS2R46P59540 309 aa17.16■□□□□ 0.34
CLN3-207ENST00000395653 C5orf64Q2M2E5 130 aa17.16■□□□□ 0.34
CLN3-207ENST00000395653 LAX1Q8IWV1 398 aa17.16■□□□□ 0.34
CLN3-207ENST00000395653 CHPT1Q8WUD6 406 aa17.16■□□□□ 0.34
CLN3-207ENST00000395653 C15orf40Q8WUR7 153 aa17.16■□□□□ 0.34
CLN3-207ENST00000395653 GIMAP1Q8WWP7 306 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms